Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.0e-31 139.4 70 100.0
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 3.9e-23 110.9 68 83.8
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 4.1e-20 100.9 68 72.1
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 1.5e-19 99.0 66 77.3
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 2.6e-19 98.2 66 75.8
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 4.5e-19 97.4 70 68.6
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 4.5e-19 97.4 70 68.6
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 1.3e-18 95.9 68 73.5
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 3.8e-18 94.4 68 72.1
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 8.5e-18 93.2 66 71.2
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 8.5e-18 93.2 66 71.2
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 8.5e-18 93.2 66 72.7
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-17 92.8 66 71.2
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-17 92.8 66 71.2
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 1.1e-17 92.8 66 71.2
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.9e-17 92.0 66 71.2
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.9e-17 92.0 66 71.2
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 3.2e-17 91.3 66 71.2
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 5.5e-17 90.5 66 69.7
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 7.2e-17 90.1 66 69.7
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 7.2e-17 90.1 66 71.2
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 7.2e-17 90.1 66 69.7
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 9.4e-17 89.7 66 69.7
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 1.2e-16 89.4 66 69.7
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-16 89.4 66 69.7
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 1.2e-16 89.4 66 69.7
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 2.7e-16 88.2 66 68.2
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 2.7e-16 88.2 68 67.6
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 3.6e-16 87.8 70 61.4
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 3.6e-16 87.8 70 61.4
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 4.7e-16 87.4 70 61.4
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 5.2e-15 84.0 66 68.2
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 9.7e-14 79.7 68 58.8
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 1.3e-13 79.3 68 60.3
BraA10t43343Z Brassica rapa HOM05D004709 ORTHO05D005669 2.8e-13 78.2 62 67.7
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 5.3e-12 73.9 65 53.8
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 5.3e-12 73.9 65 53.8
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 9.1e-12 73.2 65 53.8
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 9.1e-12 73.2 65 53.8
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 9.1e-12 73.2 65 52.3
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 9.1e-12 73.2 65 52.3
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 1.2e-11 72.8 65 52.3
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.2e-11 72.8 65 53.8
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 1.6e-11 72.4 68 52.9
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 1.6e-11 72.4 65 53.8
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 1.6e-11 72.4 65 56.9
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.0e-11 72.0 68 51.5
BcaC07g40820 Brassica carinata HOM05D004709 ORTHO05D005669 2.6e-11 71.6 50 72.0
C08p38130 Brassica napus HOM05D004709 ORTHO05D005669 2.6e-11 71.6 50 72.0
BolC8t51388H Brassica oleracea HOM05D004709 ORTHO05D005669 2.6e-11 71.6 50 72.0
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 2.6e-11 71.6 66 51.5
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 2.6e-11 71.6 66 53.0
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 2.6e-11 71.6 65 53.8
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.5e-11 71.2 64 54.7
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 3.5e-11 71.2 64 53.1
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 3.5e-11 71.2 64 53.1
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 3.5e-11 71.2 64 53.1
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 4.5e-11 70.9 66 60.6
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.5e-11 70.9 65 52.3
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.5e-11 70.9 65 50.8
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 4.5e-11 70.9 64 54.7
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 5.9e-11 70.5 65 53.8
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 7.7e-11 70.1 63 52.4
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 7.7e-11 70.1 65 52.3
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 7.7e-11 70.1 65 49.2
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 7.7e-11 70.1 64 51.6
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 7.7e-11 70.1 64 54.7
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.0e-10 69.7 64 51.6
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 1.0e-10 69.7 65 50.8
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 1.3e-10 69.3 65 52.3
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.7e-10 68.9 64 50.0
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 1.7e-10 68.9 64 50.0
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 2.9e-10 68.2 64 51.6
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.9e-10 68.2 65 50.8
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 2.9e-10 68.2 65 50.8
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 3.8e-10 67.8 63 54.0
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 3.8e-10 67.8 65 50.8
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 3.8e-10 67.8 65 50.8
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 5.0e-10 67.4 66 50.0
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 5.0e-10 67.4 64 48.4
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 6.5e-10 67.0 63 52.4
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 6.5e-10 67.0 66 50.0
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.5e-10 67.0 65 49.2
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.5e-10 67.0 65 49.2
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 8.5e-10 66.6 63 47.6
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 8.5e-10 66.6 65 47.7
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 8.5e-10 66.6 63 52.4
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.1e-09 66.2 65 50.8
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 1.1e-09 66.2 66 48.5
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 1.5e-09 65.9 65 44.6
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.5e-09 65.9 63 50.8
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.5e-09 65.9 63 50.8
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 1.9e-09 65.5 63 61.9
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 1.9e-09 65.5 64 50.0
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 1.9e-09 65.5 65 47.7
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.2e-09 64.7 64 46.9
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 3.2e-09 64.7 65 46.2
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 3.2e-09 64.7 65 47.7
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 3.2e-09 64.7 66 47.0
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 4.2e-09 64.3 65 49.2
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 4.2e-09 64.3 64 48.4
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 4.2e-09 64.3 65 49.2
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 4.2e-09 64.3 65 44.6
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 4.2e-09 64.3 66 47.0
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 4.2e-09 64.3 64 50.0
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 4.2e-09 64.3 63 47.6
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 9.4e-09 63.2 65 43.1
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 1.2e-08 62.8 64 45.3
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 1.2e-08 62.8 65 47.7
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 2.1e-08 62.0 65 47.7
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 2.1e-08 62.0 60 50.0
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.7e-08 61.6 65 43.1
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 4.7e-08 60.8 58 50.0
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 4.7e-08 60.8 65 46.2
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 8.0e-08 60.1 66 40.9
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 8.0e-08 60.1 65 41.5
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 1.0e-07 59.7 58 55.2
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 1.0e-07 59.7 64 45.3
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 1.4e-07 59.3 68 45.6
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.8e-07 58.9 65 44.6
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 1.8e-07 58.9 63 46.0
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.8e-07 58.9 68 45.6
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 3.0e-07 58.2 60 46.7
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 4.0e-07 57.8 65 43.1
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 5.2e-07 57.4 65 44.6
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 1.2e-06 56.2 64 40.6
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 1.2e-06 56.2 44 56.8
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.2e-06 56.2 68 44.1
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 2.6e-06 55.1 64 42.2
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 2.6e-06 55.1 64 42.2
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 2.6e-06 55.1 68 44.1
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.3e-06 54.7 45 57.8
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 4.4e-06 54.3 47 51.1
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 7.5e-06 53.5 64 43.8


User provided reference genes

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