Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 4.7e-194 681.0 346 100.0
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 6.7e-124 448.0 363 65.0
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 1.2e-117 427.2 369 62.6
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 8.0e-117 424.5 367 61.9
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 1.7e-111 406.8 307 65.1
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 3.8e-111 405.6 318 63.2
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 1.2e-109 400.6 309 64.4
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 2.7e-109 399.4 309 64.4
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 2.7e-109 399.4 309 64.4
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 2.1e-85 320.1 232 68.1
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 1.7e-79 300.4 305 52.8
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 2.2e-74 283.5 320 44.1
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 1.9e-73 280.4 295 47.8
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 4.6e-72 275.8 296 47.6
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 3.3e-70 269.6 283 48.8
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 3.6e-69 266.2 296 47.3
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 2.6e-67 260.0 296 44.3
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 3.7e-66 256.1 286 44.4
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 2.1e-64 250.4 303 42.2
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 3.5e-64 249.6 327 39.1
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 2.3e-63 246.9 302 44.4
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 3.3e-62 243.0 291 44.0
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 7.3e-62 241.9 307 42.3
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.6e-61 240.7 327 37.9
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 1.6e-56 224.2 285 43.9
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 7.8e-56 221.9 314 37.9
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 1.0e-55 221.5 313 36.7
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 1.7e-55 220.7 289 42.9
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 8.7e-55 218.4 273 45.4
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 1.5e-54 217.6 318 40.6
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 1.9e-54 217.2 290 40.3
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 1.9e-54 217.2 313 36.4
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 3.3e-54 216.5 211 52.1
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.6e-53 214.2 257 42.0
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 2.8e-53 213.4 296 38.5
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 4.0e-52 209.5 327 35.8
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 2.2e-50 203.8 296 36.5
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 2.9e-50 203.4 294 37.4
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 1.9e-49 200.7 305 37.0
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 4.2e-49 199.5 320 34.4
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 6.0e-48 195.7 286 38.1
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 1.6e-45 187.6 214 43.9
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 3.8e-42 176.4 329 35.6
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 7.1e-41 172.2 193 44.6
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 9.9e-35 151.8 297 33.3
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 3.8e-34 149.8 199 41.2
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 6.7e-31 139.0 160 45.6
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 9.0e-28 128.6 279 35.1
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 7.6e-27 125.6 279 34.4
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 1.1e-25 121.7 139 40.3
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 3.3e-22 110.2 179 36.9
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 1.6e-16 91.3 193 26.4
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 2.7e-16 90.5 319 24.8
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 2.7e-16 90.5 319 26.6
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 5.7e-14 82.8 184 31.0
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 3.7e-13 80.1 271 25.5
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 2.0e-11 74.3 331 22.7
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 2.9e-10 70.5 280 22.9
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 4.7e-08 63.2 150 27.3
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 4.7e-08 63.2 160 27.5
Thecc.04G258100 Theobroma cacao HOM05D008307 ORTHO05D010374 2.6e-06 57.4 44 56.8


User provided reference genes

Program Settings