Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.9e-107 392.5 201 100.0
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 1.5e-51 206.8 202 61.4
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.7e-50 203.4 206 58.7
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 3.5e-48 195.7 202 58.4
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 4.3e-46 188.7 198 57.1
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 3.6e-45 185.7 198 56.6
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 6.6e-39 164.9 182 56.0
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 2.5e-38 162.9 203 50.7
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 2.5e-38 162.9 206 50.5
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 7.3e-38 161.4 212 48.1
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.6e-37 160.2 203 50.7
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 2.8e-37 159.5 211 48.8
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 4.7e-37 158.7 199 50.3
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 1.8e-36 156.8 211 48.3
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 1.8e-36 156.8 211 48.3
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 1.8e-36 156.8 211 48.3
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 4.1e-33 145.6 233 45.1
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 9.2e-33 144.4 207 46.9
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 1.7e-31 140.2 212 47.2
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 1.6e-29 133.7 214 43.5
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 1.4e-28 130.6 187 44.4
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 2.8e-21 106.3 101 58.4
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 1.3e-18 97.4 206 37.4
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 1.7e-18 97.1 208 36.1
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 1.4e-17 94.0 207 35.3
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 2.4e-17 93.2 207 35.3
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 5.4e-17 92.0 195 35.9
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 7.1e-17 91.7 198 37.4
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.6e-16 90.5 198 37.4
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 3.5e-16 89.4 207 34.8
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 1.0e-15 87.8 190 37.9
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 3.9e-15 85.9 207 33.8
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 3.9e-15 85.9 208 34.6
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 1.5e-14 84.0 208 33.2
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 1.9e-14 83.6 223 34.5
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 1.9e-14 83.6 204 34.8
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 1.9e-14 83.6 195 34.4
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 3.3e-14 82.8 213 31.9
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 7.3e-14 81.6 206 35.0
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 2.8e-13 79.7 193 35.2
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 3.6e-13 79.3 196 33.7
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 3.6e-13 79.3 204 31.4
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 3.6e-13 79.3 210 34.3
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 8.1e-13 78.2 205 33.7
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 1.4e-12 77.4 216 32.4
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 1.8e-12 77.0 202 32.2
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 1.8e-12 77.0 217 32.3
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 3.1e-12 76.3 219 28.8
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 3.1e-12 76.3 211 35.1
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 4.0e-12 75.9 219 29.7
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 5.3e-12 75.5 220 30.0
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 1.2e-11 74.3 204 31.9
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 1.2e-11 74.3 204 32.4
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 1.2e-11 74.3 218 32.6
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 2.0e-11 73.6 211 33.2
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 2.6e-11 73.2 213 34.7
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 3.4e-11 72.8 208 28.8
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 1.7e-10 70.5 126 39.7
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 2.9e-10 69.7 215 31.6
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 2.9e-10 69.7 201 29.9
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 2.9e-10 69.7 191 35.6
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 2.9e-10 69.7 234 29.5
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 3.8e-10 69.3 219 32.0
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 4.9e-10 68.9 237 30.4
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 1.1e-09 67.8 74 52.7
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 1.9e-09 67.0 209 28.7
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 2.4e-09 66.6 55 60.0
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 7.1e-09 65.1 205 32.7
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 9.3e-09 64.7 219 29.2
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 9.3e-09 64.7 204 32.4
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 9.3e-09 64.7 68 54.4
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 3.5e-08 62.8 201 28.4
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 4.6e-08 62.4 205 29.3
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 6.0e-08 62.0 209 31.1
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 1.1e-06 57.8 230 29.1
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.1e-06 57.8 170 29.4
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 3.3e-06 56.2 210 28.6


User provided reference genes

Program Settings