Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR096880 Cardamine hirsuta HOM05D007747 ORTHO05D009997 3.0e-37 157.9 75 100.0
CARHR101820 Cardamine hirsuta HOM05D007747 ORTHO05D009997 4.7e-30 134.0 75 81.3
AT3G20993 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 1.7e-24 115.5 73 71.2
AL807U10010 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 8.0e-22 106.7 72 65.3
CARHR121310 Cardamine hirsuta HOM05D007747 ORTHO05D009997 1.4e-21 105.9 76 63.2
AT3G20997 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 4.4e-20 100.9 72 61.1
AL5G43420 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 9.7e-20 99.8 76 60.5
AT3G61177 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 6.3e-19 97.1 76 59.2
A07p30900 Brassica napus HOM05D007747 ORTHO05D009997 4.1e-18 94.4 73 53.4
BcaC08g45800 Brassica carinata HOM05D007747 ORTHO05D009997 5.3e-18 94.0 73 53.4
C06p35890 Brassica napus HOM05D007747 ORTHO05D009997 5.3e-18 94.0 73 53.4
BraA07t30726Z Brassica rapa HOM05D007747 ORTHO05D009997 5.3e-18 94.0 73 53.4
Carub.0230s0002 Capsella rubella HOM05D007747 ORTHO05D009997 7.0e-18 93.6 74 59.5
AT3G61175 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 1.2e-17 92.8 78 59.0
Thhalv10006351m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 1.2e-17 92.8 73 56.2
Carub.0001s1284 Capsella rubella HOM05D007747 ORTHO05D009997 3.5e-17 91.3 78 61.5
BcaB03g15568 Brassica carinata HOM05D007747 ORTHO05D009997 1.7e-16 89.0 73 52.1
CARHR096870 Cardamine hirsuta HOM05D007747 ORTHO05D009997 6.5e-16 87.0 45 82.2
A07p30920 Brassica napus HOM05D007747 ORTHO05D009997 2.7e-14 81.6 73 52.1
Thhalv10029330m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 2.7e-14 81.6 76 55.3
C06p35910 Brassica napus HOM05D007747 ORTHO05D009997 8.0e-14 80.1 73 50.7
Carub.0001s1285 Capsella rubella HOM05D007747 ORTHO05D009997 1.0e-13 79.7 77 55.8
Thhalv10003401m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 4.0e-13 77.8 76 51.3
Thhalv10006468m.g Eutrema salsugineum HOM05D007747 ORTHO05D009997 2.6e-12 75.1 73 49.3
Sp5g02203 Schrenkiella parvula HOM05D009342 ORTHO05D009997 3.4e-12 74.7 76 51.3
A09p53240 Brassica napus HOM05D009342 ORTHO05D009997 7.5e-12 73.6 76 50.0
Sp5g02207 Schrenkiella parvula HOM05D007747 ORTHO05D009997 1.7e-11 72.4 76 48.7
THA.LOC104815826 Tarenaya hassleriana HOM05D013401 ORTHO05D009997 1.7e-11 72.4 72 43.1
BcaB06g29617 Brassica carinata HOM05D016272 ORTHO05D014853 2.8e-11 71.6 77 45.5
Aa31LG10G15250 Aethionema arabicum HOM05D009342 ORTHO05D009997 4.8e-11 70.9 72 44.4
BolC4t24705H Brassica oleracea HOM05D007747 ORTHO05D009997 4.8e-11 70.9 73 49.3
BcaC07g40621 Brassica carinata HOM05D009342 ORTHO05D009997 6.3e-11 70.5 76 48.7
THA.LOC109116624 Tarenaya hassleriana HOM05D013401 ORTHO05D009997 6.3e-11 70.5 71 39.4
C08p36050 Brassica napus HOM05D009342 ORTHO05D009997 8.3e-11 70.1 76 48.7
BolC8t51185H Brassica oleracea HOM05D009342 ORTHO05D009997 8.3e-11 70.1 76 48.7
AT3G61172 Arabidopsis thaliana HOM05D009342 ORTHO05D009997 1.4e-10 69.3 69 44.9
A04p01250 Brassica napus HOM05D007747 ORTHO05D009997 1.8e-10 68.9 76 47.4
C08p36030 Brassica napus HOM05D007747 ORTHO05D009997 1.8e-10 68.9 74 45.9
BraA04t15844Z Brassica rapa HOM05D007747 ORTHO05D009997 1.8e-10 68.9 76 47.4
AL5G21440 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 3.1e-10 68.2 75 45.3
BcaC08g45110 Brassica carinata HOM05D007747 ORTHO05D009997 4.1e-10 67.8 76 44.7
C06p27200 Brassica napus HOM05D007747 ORTHO05D009997 4.1e-10 67.8 76 44.7
AL2G27660 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 5.3e-10 67.4 74 48.6
AL8G11140 Arabidopsis lyrata HOM05D009342 ORTHO05D012604 5.3e-10 67.4 69 42.0
BcaC07g40620 Brassica carinata HOM05D007747 ORTHO05D009997 5.3e-10 67.4 74 44.6
BcaB07g30795 Brassica carinata HOM05D009342 ORTHO05D012604 7.0e-10 67.0 77 41.6
A09p53230 Brassica napus HOM05D007747 ORTHO05D009997 7.0e-10 67.0 74 47.3
AL5G21430 Arabidopsis lyrata HOM05D007747 ORTHO05D009997 1.6e-09 65.9 74 41.9
Carub.0002s0802 Capsella rubella HOM05D007747 ORTHO05D009997 1.6e-09 65.9 75 42.7
A05p05960 Brassica napus HOM05D007747 ORTHO05D009997 2.0e-09 65.5 76 47.4
BraA05t19559Z Brassica rapa HOM05D007747 ORTHO05D009997 2.0e-09 65.5 76 47.4
BolC4t22310H Brassica oleracea HOM05D007747 ORTHO05D009997 3.5e-09 64.7 76 46.1
Carub.0001s3631 Capsella rubella HOM05D007747 ORTHO05D014853 3.5e-09 64.7 75 46.7
A07p25360 Brassica napus HOM05D007747 ORTHO05D009997 4.5e-09 64.3 76 43.4
BraA07t30181Z Brassica rapa HOM05D007747 ORTHO05D009997 4.5e-09 64.3 76 43.4
BraA07t30680Z Brassica rapa HOM05D007747 ORTHO05D009997 5.9e-09 63.9 80 45.0
A04p01260 Brassica napus HOM05D007747 ORTHO05D028248 7.7e-09 63.5 78 44.9
C04p31610 Brassica napus HOM05D007747 ORTHO05D028248 7.7e-09 63.5 78 43.6
BolC4t24708H Brassica oleracea HOM05D007747 ORTHO05D028248 7.7e-09 63.5 78 43.6
BraA04t15845Z Brassica rapa HOM05D007747 ORTHO05D028248 7.7e-09 63.5 78 44.9
A07p30430 Brassica napus HOM05D007747 ORTHO05D009997 1.0e-08 63.2 80 45.0
AT3G43505 Arabidopsis thaliana HOM05D007747 ORTHO05D009997 1.3e-08 62.8 75 42.7
Thhalv10017941m.g Eutrema salsugineum HOM05D007747 ORTHO05D014853 1.7e-08 62.4 72 44.4
BcaB02g08951 Brassica carinata HOM05D007747 ORTHO05D009997 2.2e-08 62.0 76 43.4
A04p20120 Brassica napus HOM05D016272 ORTHO05D014853 2.2e-08 62.0 77 40.3
BolC4t27109H Brassica oleracea HOM05D016272 ORTHO05D014853 2.9e-08 61.6 76 39.5
CARHR286760 Cardamine hirsuta HOM05D009342 ORTHO05D009997 5.0e-08 60.8 73 42.5
C04p55820 Brassica napus HOM05D016272 ORTHO05D014853 6.5e-08 60.5 76 39.5
Carub.0005s2783 Capsella rubella HOM05D009342 ORTHO05D009997 8.5e-08 60.1 76 42.1
C04p55800 Brassica napus HOM05D016272 ORTHO05D014853 1.5e-07 59.3 77 37.7
AL8G18250 Arabidopsis lyrata HOM05D007747 ORTHO05D023629 2.5e-07 58.5 82 41.5
AL8G18260 Arabidopsis lyrata HOM05D007747 ORTHO05D023629 2.5e-07 58.5 82 41.5
C06p27230 Brassica napus HOM05D007747 ORTHO05D009997 2.5e-07 58.5 64 43.8
Carub.0002s1314 Capsella rubella HOM05D007747 ORTHO05D009997 2.5e-07 58.5 75 40.0
BcaB06g28203 Brassica carinata HOM05D007747 ORTHO05D024130 3.2e-07 58.2 79 39.2
C06p27260 Brassica napus HOM05D007747 ORTHO05D009997 5.5e-07 57.4 76 43.4
C06p27240 Brassica napus HOM05D007747 ORTHO05D009997 7.2e-07 57.0 76 43.4
BolC6t37896H Brassica oleracea HOM05D007747 ORTHO05D009997 7.2e-07 57.0 76 43.4
BolC6t38713H Brassica oleracea HOM05D007747 ORTHO05D009997 7.2e-07 57.0 47 51.1
A04p20110 Brassica napus HOM05D016272 ORTHO05D014853 9.4e-07 56.6 77 36.4
A07p18970 Brassica napus HOM05D007747 ORTHO05D024130 9.4e-07 56.6 83 36.1
C06p27210 Brassica napus HOM05D007747 ORTHO05D009997 9.4e-07 56.6 76 43.4
C06p27220 Brassica napus HOM05D007747 ORTHO05D009997 9.4e-07 56.6 76 43.4
BraA07t29602Z Brassica rapa HOM05D007747 ORTHO05D024130 9.4e-07 56.6 83 36.1
AT3G61182 Arabidopsis thaliana HOM05D007747 ORTHO05D014853 1.2e-06 56.2 78 41.0
BolC4t27108H Brassica oleracea HOM05D016272 ORTHO05D014853 1.2e-06 56.2 77 36.4
AL5G43410 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 2.7e-06 55.1 55 49.1
A02p30830 Brassica napus HOM05D009342 ORTHO05D012604 2.7e-06 55.1 78 38.5
BolC4t23792H Brassica oleracea HOM05D007747 ORTHO05D024130 2.7e-06 55.1 83 36.1
BraA02t08097Z Brassica rapa HOM05D009342 ORTHO05D012604 2.7e-06 55.1 78 38.5
BraA07t30180Z Brassica rapa HOM05D007747 ORTHO05D009997 2.7e-06 55.1 76 43.4
C06p27250 Brassica napus HOM05D007747 ORTHO05D009997 3.6e-06 54.7 76 42.1
A07p25370 Brassica napus HOM05D007747 ORTHO05D009997 4.7e-06 54.3 76 42.1
A07p25380 Brassica napus HOM05D007747 ORTHO05D009997 4.7e-06 54.3 76 42.1
BraA07t30182Z Brassica rapa HOM05D007747 ORTHO05D009997 4.7e-06 54.3 76 42.1
AL5G43440 Arabidopsis lyrata HOM05D007747 ORTHO05D014853 6.1e-06 53.9 75 38.7
BolC6t37892H Brassica oleracea HOM05D007747 ORTHO05D009997 6.1e-06 53.9 76 40.8
A02p30770 Brassica napus HOM05D009342 ORTHO05D012604 8.0e-06 53.5 78 37.2
C02p48340 Brassica napus HOM05D009342 ORTHO05D012604 8.0e-06 53.5 78 38.5
Carub.0008s0074 Capsella rubella HOM05D009342 ORTHO05D012604 8.0e-06 53.5 73 39.7


User provided reference genes

Program Settings