Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR096170 Cardamine hirsuta HOM05D001348 ORTHO05D008393 2.9e-34 147.9 70 100.0
Carub.0003s2038 Capsella rubella HOM05D001348 ORTHO05D008393 5.9e-11 70.5 53 64.2
CARHR096150 Cardamine hirsuta HOM05D001348 ORTHO05D008393 5.9e-11 70.5 53 64.2
AL3G34160 Arabidopsis lyrata HOM05D001348 ORTHO05D008393 1.7e-10 68.9 53 62.3
AT3G20440 Arabidopsis thaliana HOM05D001348 ORTHO05D008393 5.0e-10 67.4 53 62.3
A05p28460 Brassica napus HOM05D001348 ORTHO05D008393 2.5e-09 65.1 53 58.5
BraA05t21725Z Brassica rapa HOM05D001348 ORTHO05D008393 2.5e-09 65.1 53 58.5
Aa31LG8G7250 Aethionema arabicum HOM05D001348 ORTHO05D008393 4.2e-09 64.3 44 65.9
BcaB06g26109 Brassica carinata HOM05D001348 ORTHO05D008393 5.5e-09 63.9 53 58.5
BcaC05g28331 Brassica carinata HOM05D001348 ORTHO05D008393 5.5e-09 63.9 53 56.6
BolC5t33106H Brassica oleracea HOM05D001348 ORTHO05D008393 5.5e-09 63.9 53 56.6
Thhalv10020019m.g Eutrema salsugineum HOM05D001348 ORTHO05D008393 5.5e-09 63.9 53 58.5
Sp3g18450 Schrenkiella parvula HOM05D001348 ORTHO05D008393 5.5e-09 63.9 53 58.5
C05p43900 Brassica napus HOM05D001348 ORTHO05D008393 7.2e-09 63.5 53 56.6
Cpa.g.sc12.269 Carica papaya HOM05D001348 ORTHO05D008393 4.7e-08 60.8 44 59.1
Ciclev10007401m.g Citrus clementina HOM05D001348 ORTHO05D008393 4.7e-08 60.8 44 54.5
THA.LOC104817860 Tarenaya hassleriana HOM05D001348 ORTHO05D008393 4.7e-08 60.8 53 54.7
MD11G1212700 Malus domestica HOM05D001348 ORTHO05D008393 6.1e-08 60.5 44 56.8
VMungo0540G0045 Vigna mungo HOM05D001348 ORTHO05D008393 6.1e-08 60.5 44 61.4
Prupe.4G219000 Prunus persica HOM05D001348 ORTHO05D008393 1.0e-07 59.7 44 54.5
Duzib213G0150 Durio zibethinus HOM05D001348 ORTHO05D008393 1.8e-07 58.9 53 54.7
Eucgr.F03487 Eucalyptus grandis HOM05D001348 ORTHO05D008393 1.8e-07 58.9 44 56.8
Sed0016477 Sechium edule HOM05D001348 ORTHO05D008393 4.0e-07 57.8 37 56.8
HanXRQChr03g0076721 Helianthus annuus HOM05D001348 ORTHO05D008393 5.2e-07 57.4 44 54.5
Medtr3g053220 Medicago truncatula HOM05D001348 ORTHO05D008393 5.2e-07 57.4 44 56.8
Phvul.006G047000 Phaseolus vulgaris HOM05D001348 ORTHO05D008393 5.2e-07 57.4 44 56.8
Psat5g173680 Pisum sativum HOM05D001348 ORTHO05D008393 5.2e-07 57.4 44 56.8
TPR.G14440 Trifolium pratense HOM05D001348 ORTHO05D008393 5.2e-07 57.4 44 56.8
COL.COLO4_09699 Corchorus olitorius HOM05D001348 ORTHO05D008393 6.7e-07 57.0 53 49.1
MELO3C013141.2 Cucumis melo HOM05D001348 ORTHO05D008393 6.7e-07 57.0 37 56.8
CANSAT78G2496 Cannabis sativa HOM05D001348 ORTHO05D008393 8.8e-07 56.6 44 54.5
FvH4_3g23220 Fragaria vesca HOM05D001348 ORTHO05D008393 1.2e-06 56.2 44 52.3
FAN16G1777 Fragaria x ananassa HOM05D001348 ORTHO05D008393 1.2e-06 56.2 44 52.3
FAN21G3120 Fragaria x ananassa HOM05D001348 ORTHO05D008393 1.2e-06 56.2 44 52.3
RcHm_v2.0_Chr5g0040901 Rosa chinensis HOM05D001348 ORTHO05D008393 1.2e-06 56.2 44 52.3
Glyma.18G092600 Glycine max HOM05D001348 ORTHO05D008393 1.5e-06 55.8 44 56.8
Lsat_1_v5_gn_9_92360 Lactuca sativa HOM05D001348 ORTHO05D008393 1.5e-06 55.8 44 56.8
CiPaw.11G192600 Carya illinoinensis HOM05D001348 ORTHO05D008393 2.0e-06 55.5 44 52.3
CsaV3_7G021990 Cucumis sativus L. HOM05D001348 ORTHO05D008393 2.0e-06 55.5 37 56.8
ClCG09G010970 Citrullus lanatus HOM05D001348 ORTHO05D008393 2.6e-06 55.1 36 55.6
Nn1g07231 Nelumbo nucifera HOM05D001348 ORTHO05D008393 2.6e-06 55.1 35 62.9
PGR031G0282 Punica granatum HOM05D001348 ORTHO05D008393 2.6e-06 55.1 44 54.5
ECA240G2960 Erigeron canadensis HOM05D001348 ORTHO05D008393 3.3e-06 54.7 44 52.3
FAN25G0826 Fragaria x ananassa HOM05D001348 ORTHO05D008393 3.3e-06 54.7 44 50.0
FAN25G0105 Fragaria x ananassa HOM05D001348 ORTHO05D008393 4.4e-06 54.3 44 50.0
QL08p008747 Quercus lobata HOM05D001348 ORTHO05D008393 4.4e-06 54.3 35 62.9
QL09p024307 Quercus lobata HOM05D001348 ORTHO05D008393 4.4e-06 54.3 35 62.9
Thecc.07G031600 Theobroma cacao HOM05D001348 ORTHO05D008393 4.4e-06 54.3 53 49.1
MBI10_g29397_MAGBIO Magnolia biondii HOM05D001348 ORTHO05D008393 5.7e-06 53.9 35 60.0
PSO478G3826 Papaver somniferum HOM05D001348 ORTHO05D008393 5.7e-06 53.9 37 62.2
Lj1C878T2 Lonicera japonica HOM05D001348 ORTHO05D008393 7.5e-06 53.5 37 62.2
Manes.03G133300 Manihot esculenta HOM05D001348 ORTHO05D008393 7.5e-06 53.5 35 62.9
Potri.001G359200 Populus trichocarpa HOM05D001348 ORTHO05D008393 7.5e-06 53.5 44 50.0
vmacro09698 Vaccinium macrocarpon HOM05D001348 ORTHO05D008393 9.7e-06 53.1 35 62.9
GSVIVG01037695001 Vitis vinifera HOM05D001348 ORTHO05D008393 9.7e-06 53.1 35 62.9


User provided reference genes

Program Settings