Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 4.5e-136 488.0 263 100.0
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 6.9e-105 384.4 268 82.1
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 5.1e-100 368.2 263 78.7
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 6.7e-100 367.9 268 79.5
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 7.4e-99 364.4 269 78.8
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 2.2e-98 362.8 266 78.6
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 2.2e-98 362.8 266 78.9
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 2.2e-98 362.8 266 78.6
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 4.8e-98 361.7 263 77.2
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 4.5e-96 355.1 263 76.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 4.1e-89 332.0 264 74.2
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.8e-84 316.6 255 74.5
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.2e-83 313.9 267 71.5
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 2.0e-56 223.4 179 67.6
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 3.6e-53 212.6 256 50.0
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.2e-52 208.8 252 47.6
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 5.2e-52 208.8 253 50.2
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 8.9e-52 208.0 252 47.2
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 8.9e-52 208.0 254 46.5
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.5e-51 207.2 251 47.4
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.9e-50 203.0 252 52.4
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 8.3e-50 201.4 264 52.3
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.1e-49 201.1 252 52.4
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 3.2e-49 199.5 259 53.3
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 3.5e-48 196.1 251 49.8
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 3.5e-48 196.1 251 49.4
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 4.6e-48 195.7 251 50.2
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 6.0e-48 195.3 257 53.7
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.7e-47 193.7 253 49.4
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 2.3e-47 193.4 260 49.6
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.6e-47 191.4 276 48.2
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.1e-46 191.0 250 51.2
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.5e-46 190.7 253 49.0
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.3e-46 188.3 255 47.8
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.6e-45 187.2 253 51.0
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.6e-45 187.2 258 45.7
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.1e-45 186.8 254 47.6
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 2.8e-45 186.4 253 49.4
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 3.6e-45 186.0 255 48.2
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.6e-45 186.0 253 47.4
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 6.2e-45 185.3 247 48.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 8.1e-45 184.9 253 50.6
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.1e-44 184.5 249 47.8
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.4e-44 184.1 247 49.0
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.4e-44 184.1 275 46.9
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 2.3e-44 183.3 252 47.6
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 3.1e-44 183.0 258 51.2
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 4.0e-44 182.6 251 47.8
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.2e-44 182.2 254 46.9
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 6.8e-44 181.8 254 46.5
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 6.8e-44 181.8 257 44.0
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 8.9e-44 181.4 248 46.8
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.2e-43 181.0 253 45.8
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.5e-43 180.6 251 46.6
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.5e-43 180.6 257 48.2
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 2.0e-43 180.3 263 49.4
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.0e-43 180.3 226 47.3
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 2.6e-43 179.9 257 46.3
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.4e-43 179.5 252 48.4
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 5.8e-43 178.7 257 47.5
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 7.5e-43 178.3 252 49.2
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 9.9e-43 177.9 261 47.9
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 9.9e-43 177.9 249 47.0
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.3e-42 177.6 261 41.4
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.7e-42 177.2 247 50.2
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.7e-42 177.2 247 50.2
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 2.2e-42 176.8 261 46.4
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 2.9e-42 176.4 252 49.6
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 3.7e-42 176.0 254 47.6
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 3.7e-42 176.0 249 48.2
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 8.3e-42 174.9 261 47.5
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.4e-41 174.1 251 47.8
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.4e-41 174.1 249 46.6
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.4e-41 174.1 256 47.3
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.2e-41 172.9 267 46.4
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 3.2e-41 172.9 256 46.5
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 3.2e-41 172.9 255 47.1
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 3.2e-41 172.9 250 47.6
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.1e-41 172.6 269 45.7
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 7.1e-41 171.8 258 44.6
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.2e-40 171.0 254 45.7
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.6e-40 170.6 253 43.9
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 2.1e-40 170.2 252 45.6
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 3.5e-40 169.5 249 43.8
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 4.6e-40 169.1 256 46.1
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 7.8e-40 168.3 246 42.7
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.0e-39 167.9 256 45.7
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.0e-39 167.9 266 41.0
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.3e-39 167.5 173 53.8
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 2.3e-39 166.8 248 46.8
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 3.9e-39 166.0 251 43.4
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.9e-39 166.0 288 43.1
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 5.1e-39 165.6 234 48.3
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.5e-38 164.1 271 42.1
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.5e-38 164.1 246 45.5
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 5.6e-38 162.2 271 41.7
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 5.6e-38 162.2 248 45.6
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.6e-38 162.2 255 40.8
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 5.6e-38 162.2 182 48.4
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 7.3e-38 161.8 248 46.4
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 7.3e-38 161.8 196 53.1
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.1e-37 160.2 249 43.0
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 2.8e-37 159.8 253 44.7
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 3.6e-37 159.5 248 45.6
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 8.1e-37 158.3 249 43.0
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 8.9e-36 154.8 162 50.6
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 8.9e-36 154.8 258 40.7
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 2.6e-35 153.3 252 45.2
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.7e-34 150.6 161 50.9
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.7e-34 150.6 254 43.7
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 4.9e-34 149.1 262 41.2
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 6.4e-34 148.7 309 36.2
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 8.4e-34 148.3 265 43.8
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 8.4e-34 148.3 177 54.2
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 8.4e-34 148.3 274 42.3
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.2e-32 144.4 261 42.9
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 2.7e-32 143.3 281 42.3
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 4.6e-32 142.5 259 40.2
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.0e-31 141.4 257 42.4
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.3e-31 141.0 271 39.5
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.5e-30 137.5 200 46.5
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 5.8e-27 125.6 367 32.4
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 7.1e-25 118.6 193 40.9
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.2e-24 117.9 253 40.7
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.1e-24 117.1 145 45.5
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 5.1e-23 112.5 156 42.3
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 3.6e-21 106.3 131 47.3
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 8.1e-21 105.1 124 47.6
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 9.0e-20 101.7 243 35.0
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.8e-18 96.3 128 47.7
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 6.4e-18 95.5 166 33.7
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 6.4e-18 95.5 255 36.5
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 8.4e-18 95.1 286 32.9
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 8.4e-18 95.1 251 34.7
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 2.4e-17 93.6 201 32.3
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.3e-15 87.0 126 51.6
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 6.7e-15 85.5 155 36.1
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 8.7e-15 85.1 161 39.1
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 1.1e-14 84.7 162 40.7
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.1e-14 84.7 127 47.2
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.5e-14 83.6 124 40.3
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.8e-13 80.1 57 64.9
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.5e-11 74.3 109 50.5
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 7.1e-09 65.5 55 58.2
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 1.5e-06 57.8 84 34.5
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 2.5e-06 57.0 35 68.6
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 2.5e-06 57.0 35 68.6


User provided reference genes

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