Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 8.1e-152 540.4 283 100.0
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 5.7e-121 438.0 288 80.2
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 3.3e-113 412.1 280 78.2
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 7.4e-113 411.0 281 77.9
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 4.5e-102 375.2 280 71.8
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.9e-100 369.8 309 68.3
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 4.8e-96 355.1 281 68.7
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.0e-90 337.4 281 68.3
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.0e-90 337.4 281 68.3
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 5.4e-87 325.1 281 66.2
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 3.3e-84 315.8 303 62.0
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 4.3e-84 315.5 281 66.2
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.8e-83 312.8 304 61.5
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 3.4e-81 305.8 284 61.3
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 7.8e-78 294.7 296 57.1
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 2.6e-65 253.1 304 50.3
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.7e-64 249.2 307 48.9
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.1e-63 247.7 304 48.7
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.1e-63 247.7 304 48.7
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 4.1e-63 245.7 309 49.8
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 4.1e-63 245.7 309 50.5
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 5.4e-63 245.4 307 49.2
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.7e-62 243.0 297 50.2
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 8.6e-61 238.0 303 48.5
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 8.6e-61 238.0 310 46.8
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 8.6e-61 238.0 330 47.9
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.5e-60 237.3 284 50.0
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 7.3e-60 235.0 308 48.4
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 7.3e-60 235.0 324 46.9
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 1.2e-59 234.2 313 46.0
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.6e-59 233.8 307 48.5
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 4.7e-59 232.3 315 46.3
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 6.2e-59 231.9 310 49.0
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.1e-58 231.1 302 50.3
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.4e-58 230.7 267 50.9
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 5.2e-58 228.8 296 48.3
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 1.2e-57 227.6 312 43.6
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 5.4e-55 218.8 299 44.8
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 9.2e-55 218.0 307 44.3
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 2.1e-54 216.9 310 43.9
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 2.7e-54 216.5 292 44.2
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 7.8e-54 214.9 281 48.4
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.7e-53 213.8 309 45.0
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.7e-53 213.8 294 43.9
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 6.6e-53 211.8 312 43.6
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 1.5e-52 210.7 292 43.8
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 2.5e-52 209.9 293 43.7
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 2.5e-52 209.9 301 43.5
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 3.3e-52 209.5 297 43.8
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 7.3e-52 208.4 317 40.7
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 1.2e-51 207.6 297 43.8
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 1.6e-51 207.2 316 45.9
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 2.1e-51 206.8 302 43.4
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 2.4e-50 203.4 309 42.4
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 2.4e-50 203.4 332 40.7
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 4.0e-50 202.6 301 43.9
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 5.2e-50 202.2 312 41.3
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 5.2e-50 202.2 312 41.3
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 6.9e-50 201.8 312 43.3
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.2e-49 201.1 299 43.1
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 1.5e-49 200.7 292 43.2
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.6e-49 199.9 313 42.5
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 3.4e-49 199.5 300 42.0
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 5.8e-49 198.7 300 43.7
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.2e-48 196.8 306 43.8
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 3.8e-48 196.1 299 41.5
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 6.4e-48 195.3 300 42.7
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.1e-47 194.5 285 42.5
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.4e-47 194.1 292 42.5
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.9e-47 193.7 300 41.7
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 4.2e-47 192.6 302 42.4
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 4.2e-47 192.6 298 41.6
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 5.4e-47 192.2 299 42.1
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.2e-46 191.0 242 53.3
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 1.6e-46 190.7 293 43.7
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 2.7e-46 189.9 296 42.2
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 6.0e-46 188.7 230 53.9
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 7.8e-46 188.3 349 39.5
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 7.8e-46 188.3 305 42.0
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.8e-46 188.3 317 41.3
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 1.7e-45 187.2 296 41.6
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 3.0e-45 186.4 304 42.8
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 3.0e-45 186.4 335 38.5
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 3.9e-45 186.0 297 40.7
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 1.5e-44 184.1 312 39.4
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.5e-44 184.1 297 40.4
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 2.5e-44 183.3 290 40.0
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.3e-44 181.8 313 40.6
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 7.3e-44 181.8 297 39.4
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 9.6e-44 181.4 311 39.9
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 6.2e-43 178.7 263 43.7
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.1e-42 177.9 295 41.0
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 2.4e-42 176.8 277 42.6
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 9.0e-42 174.9 325 38.2
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.2e-41 174.5 300 40.3
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 4.5e-41 172.6 302 41.1
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 9.9e-41 171.4 163 63.8
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 1.3e-40 171.0 290 42.4
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 1.7e-40 170.6 293 38.9
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 2.2e-40 170.2 312 37.8
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 6.4e-40 168.7 354 36.7
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 7.9e-38 161.8 118 75.4
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.0e-37 161.4 373 34.0
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.3e-37 161.0 287 40.4
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 1.8e-37 160.6 279 39.8
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.0e-37 159.8 308 36.7
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 3.0e-37 159.8 284 39.8
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-36 157.9 212 50.5
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 2.1e-35 153.7 279 37.3
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 2.1e-35 153.7 327 37.6
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 6.2e-35 152.1 291 38.8
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 4.5e-33 146.0 283 37.1
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 9.9e-33 144.8 340 35.6
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.7e-32 144.1 151 60.3
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 2.1e-30 137.1 324 34.6
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 1.5e-28 131.0 214 43.9
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 4.3e-28 129.4 405 31.1
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.6e-28 129.0 99 62.6
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.7e-27 126.3 302 33.8
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-26 124.8 227 38.3
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 1.7e-24 117.5 211 37.0
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 3.8e-24 116.3 117 58.1
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-23 114.8 117 59.0
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 1.9e-23 114.0 209 36.4
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 2.5e-23 113.6 283 30.4
BcaC03g16136 Brassica carinata HOM05D015278 ORTHO05D032781 7.1e-23 112.1 246 39.4
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 7.1e-23 112.1 99 57.6
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.2e-22 111.3 216 37.5
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 6.0e-22 109.0 106 59.4
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 4.3e-20 102.8 223 35.0
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 2.8e-19 100.1 239 31.8
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 3.7e-19 99.8 193 38.3
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 4.8e-19 99.4 98 49.0
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 4.8e-19 99.4 339 29.5
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 4.1e-18 96.3 221 34.8
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 4.5e-17 92.8 100 55.0
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 7.7e-17 92.0 70 65.7
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 3.8e-16 89.7 144 37.5
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 2.0e-12 77.4 106 38.7
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 2.5e-12 77.0 308 27.6
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 5.7e-12 75.9 58 70.7
AL1G58150 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 2.8e-11 73.6 98 49.0
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.2e-11 72.0 55 65.5
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.2e-11 72.0 210 33.8
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 8.2e-11 72.0 101 37.6
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.0e-09 67.4 344 23.5
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.4e-09 66.6 176 31.2
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 7.7e-09 65.5 97 44.3
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 3.8e-08 63.2 81 42.0
C02p39380 Brassica napus HOM05D015278 ORTHO05D032781 2.5e-07 60.5 65 60.0
BolC2t09948H Brassica oleracea HOM05D015278 ORTHO05D032781 2.5e-07 60.5 65 60.0
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.6e-06 57.8 284 23.6
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 2.7e-06 57.0 319 25.4
C09p74960 Brassica napus HOM05D015278 ORTHO05D005923 3.6e-06 56.6 64 56.2
FAN03G0395 Fragaria x ananassa HOM05D021264 ORTHO05D022594 6.1e-06 55.8 125 34.4


User provided reference genes

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