Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 6.9e-105 384.0 201 100.0
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 8.2e-98 360.5 205 90.2
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 8.2e-98 360.5 205 90.2
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 1.4e-97 359.8 205 93.7
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 1.4e-97 359.8 205 94.6
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 1.4e-97 359.8 205 94.6
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 5.3e-97 357.8 206 90.8
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 5.3e-97 357.8 206 90.8
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 5.3e-97 357.8 206 90.8
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 5.3e-97 357.8 206 90.8
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 5.3e-97 357.8 205 90.7
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 1.5e-96 356.3 205 88.8
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 3.0e-92 342.0 205 84.9
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 1.8e-89 332.8 205 83.9
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.4e-76 290.0 208 73.1
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 4.0e-76 288.5 190 77.4
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.2e-69 266.9 201 69.7
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 1.2e-69 266.9 201 69.7
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.6e-69 266.5 201 69.7
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 4.7e-69 265.0 208 70.2
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 1.8e-68 263.1 207 67.1
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 2.3e-68 262.7 210 65.7
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 3.0e-68 262.3 201 68.2
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 3.0e-68 262.3 207 69.1
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 8.8e-68 260.8 201 67.7
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 1.5e-67 260.0 205 67.8
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 1.5e-67 260.0 204 69.1
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 2.0e-67 259.6 204 69.1
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 3.4e-67 258.8 194 75.8
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 3.4e-67 258.8 210 67.6
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 3.4e-67 258.8 202 68.8
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 5.7e-67 258.1 206 68.4
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 5.7e-67 258.1 213 66.7
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 5.7e-67 258.1 209 66.5
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 7.5e-67 257.7 206 68.9
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 7.5e-67 257.7 209 67.5
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 2.8e-66 255.8 208 66.8
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 2.8e-66 255.8 202 67.3
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 3.7e-66 255.4 216 64.8
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 4.8e-66 255.0 206 68.4
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 4.8e-66 255.0 209 67.0
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 4.8e-66 255.0 202 67.8
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 4.8e-66 255.0 202 67.8
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 4.8e-66 255.0 202 67.8
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 6.3e-66 254.6 212 64.2
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 8.3e-66 254.2 208 65.9
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 8.3e-66 254.2 202 67.8
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.4e-65 253.4 202 67.8
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 1.4e-65 253.4 206 68.0
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 1.8e-65 253.1 195 68.2
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 1.8e-65 253.1 203 67.0
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 2.4e-65 252.7 206 66.0
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 3.1e-65 252.3 202 65.8
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 4.1e-65 251.9 207 65.7
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 5.4e-65 251.5 208 65.4
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 7.0e-65 251.1 206 64.6
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 7.0e-65 251.1 201 67.7
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 7.0e-65 251.1 203 66.0
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 7.0e-65 251.1 202 66.8
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 9.1e-65 250.8 202 66.8
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 9.1e-65 250.8 211 64.5
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 9.1e-65 250.8 206 65.5
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 1.6e-64 250.0 206 64.1
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 2.7e-64 249.2 201 67.7
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 3.5e-64 248.8 200 66.5
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 5.9e-64 248.1 203 67.0
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 7.7e-64 247.7 205 66.8
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.3e-63 246.9 211 63.5
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.3e-63 246.9 211 63.5
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 1.3e-63 246.9 211 63.5
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 1.3e-63 246.9 201 65.7
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 1.3e-63 246.9 214 62.1
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 1.7e-63 246.5 201 64.7
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 2.3e-63 246.1 201 67.7
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 2.9e-63 245.7 190 65.8
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 6.6e-63 244.6 201 65.2
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.1e-62 243.8 201 65.7
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 1.9e-62 243.0 206 64.1
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 9.5e-62 240.7 190 65.3
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 1.6e-61 240.0 208 63.9
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 1.6e-61 240.0 208 63.9
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 2.1e-61 239.6 201 65.2
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 4.7e-61 238.4 182 68.1
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 6.1e-61 238.0 192 66.7
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 1.0e-60 237.3 207 61.4
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 2.3e-60 236.1 208 63.9
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 5.7e-59 231.5 190 65.8
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.7e-58 229.9 191 61.3
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 1.7e-58 229.9 191 61.3
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 3.7e-58 228.8 201 62.2
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 1.1e-57 227.3 201 61.2
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 1.2e-56 223.8 188 61.7
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 1.6e-56 223.4 193 59.1
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 4.5e-56 221.9 209 61.2
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 5.9e-56 221.5 153 73.9
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 8.3e-50 201.1 188 57.4
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 3.2e-49 199.1 176 63.6
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 3.2e-49 199.1 158 71.5
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 1.3e-47 193.7 181 59.1
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.1e-46 190.7 168 62.5
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 1.3e-42 177.2 199 48.2
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.0e-39 167.5 190 47.9
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 5.1e-39 165.2 188 46.3
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 1.4e-36 157.1 193 46.1
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.2e-32 144.1 187 46.5
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 1.9e-30 136.7 112 63.4
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 2.5e-30 136.3 121 58.7
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 3.3e-30 136.0 121 58.7
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 9.5e-30 134.4 137 51.8
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 4.2e-25 119.0 186 41.9
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 2.8e-21 106.3 131 54.2
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 2.3e-15 86.7 63 68.3
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 1.8e-12 77.0 56 71.4
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 6.4e-10 68.6 46 71.7
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 6.4e-10 68.6 47 70.2


User provided reference genes

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