Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 5.7e-74 280.8 139 100.0
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 2.8e-65 251.9 140 90.0
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 7.0e-64 247.3 140 86.4
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 5.9e-63 244.2 140 87.9
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 4.2e-61 238.0 140 88.6
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 8.0e-60 233.8 140 85.7
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 8.0e-60 233.8 140 85.7
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 8.0e-60 233.8 140 85.7
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 1.0e-59 233.4 140 85.0
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 1.4e-59 233.0 140 86.4
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 1.8e-59 232.6 140 85.0
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 2.3e-59 232.3 141 83.7
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 6.8e-59 230.7 141 84.4
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 6.8e-59 230.7 140 85.0
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 8.8e-59 230.3 140 85.0
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 4.4e-58 228.0 141 83.0
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 1.2e-55 219.9 137 81.0
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 2.3e-54 215.7 141 81.6
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 5.4e-48 194.5 132 72.7
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 2.0e-47 192.6 137 67.2
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 2.7e-47 192.2 108 82.4
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 8.6e-46 187.2 135 67.4
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 3.3e-45 185.3 102 82.4
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 7.3e-45 184.1 133 69.9
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 9.5e-45 183.7 102 83.3
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 1.2e-44 183.3 134 67.9
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 1.6e-44 183.0 131 67.9
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 6.2e-44 181.0 131 67.2
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 6.2e-44 181.0 125 71.2
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 6.2e-44 181.0 131 67.9
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 1.0e-43 180.3 132 68.2
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 1.0e-43 180.3 132 68.2
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 1.0e-43 180.3 132 68.2
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 1.4e-43 179.9 135 65.2
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 1.4e-43 179.9 125 71.2
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 1.8e-43 179.5 125 69.6
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 3.1e-43 178.7 110 74.5
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 4.0e-43 178.3 102 79.4
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 4.0e-43 178.3 132 59.8
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 4.0e-43 178.3 102 79.4
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 4.0e-43 178.3 125 69.6
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 6.8e-43 177.6 122 68.9
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 6.8e-43 177.6 102 78.4
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 8.9e-43 177.2 108 73.1
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 8.9e-43 177.2 114 73.7
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 2.0e-42 176.0 132 67.4
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 2.0e-42 176.0 116 73.3
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 2.6e-42 175.6 135 63.7
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 5.8e-42 174.5 102 77.5
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 5.8e-42 174.5 127 64.6
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 7.5e-42 174.1 102 78.4
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 9.8e-42 173.7 125 66.4
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 9.8e-42 173.7 130 64.6
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 1.3e-41 173.3 102 78.4
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 1.3e-41 173.3 131 64.9
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 1.3e-41 173.3 114 71.9
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.7e-41 172.9 133 64.7
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 2.2e-41 172.6 125 67.2
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 2.2e-41 172.6 125 64.8
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 2.2e-41 172.6 102 74.5
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 2.9e-41 172.2 130 64.6
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 2.9e-41 172.2 102 78.4
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 2.9e-41 172.2 102 78.4
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 2.9e-41 172.2 102 73.5
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 2.9e-41 172.2 102 73.5
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 3.7e-41 171.8 102 74.5
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 4.9e-41 171.4 102 74.5
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 6.4e-41 171.0 102 76.5
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 6.4e-41 171.0 108 73.1
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 8.3e-41 170.6 129 62.8
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 8.3e-41 170.6 102 75.5
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 1.1e-40 170.2 102 77.5
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 1.1e-40 170.2 102 74.5
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 1.4e-40 169.9 100 75.0
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 1.9e-40 169.5 123 65.9
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 2.4e-40 169.1 115 70.4
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 2.4e-40 169.1 125 64.8
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 2.4e-40 169.1 102 75.5
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 2.4e-40 169.1 133 66.2
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 3.2e-40 168.7 102 73.5
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 3.2e-40 168.7 132 62.9
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 3.2e-40 168.7 102 74.5
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 4.1e-40 168.3 132 65.9
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 5.4e-40 167.9 102 75.5
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 9.2e-40 167.2 132 62.1
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 1.6e-39 166.4 102 73.5
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.6e-39 166.4 102 72.5
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 2.0e-39 166.0 131 61.1
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 2.7e-39 165.6 117 63.2
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 2.7e-39 165.6 139 59.0
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 4.6e-39 164.9 98 76.5
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 6.0e-39 164.5 102 73.5
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 1.0e-38 163.7 102 71.6
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 1.0e-38 163.7 102 73.5
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 1.0e-38 163.7 108 71.3
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 1.3e-38 163.3 102 74.5
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 2.3e-38 162.5 108 68.5
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 3.9e-38 161.8 102 69.6
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 5.0e-38 161.4 125 66.4
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 8.6e-38 160.6 103 67.0
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 2.5e-37 159.1 130 62.3
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 7.3e-37 157.5 96 74.0
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 1.6e-36 156.4 108 66.7
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 3.1e-35 152.1 134 54.5
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 6.8e-35 151.0 180 47.2
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 1.5e-34 149.8 104 70.2
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 7.5e-34 147.5 87 77.0
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 9.8e-34 147.1 116 62.1
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 1.3e-33 146.7 84 79.8
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 2.9e-33 145.6 102 64.7
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 1.9e-32 142.9 83 79.5
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 7.1e-32 141.0 132 51.5
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 1.6e-31 139.8 145 51.0
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 1.5e-29 133.3 81 70.4
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.6e-28 129.8 133 52.6
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 6.2e-28 127.9 85 67.1
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 3.1e-27 125.6 97 54.6
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 7.6e-26 120.9 100 51.0
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 1.4e-24 116.7 100 50.0
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 1.7e-22 109.8 97 48.5
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 2.3e-22 109.4 61 80.3
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 1.4e-19 100.1 61 70.5
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 1.8e-19 99.8 117 42.7
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 4.0e-19 98.6 61 70.5
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.9e-17 92.4 61 67.2
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 6.0e-15 84.7 85 44.7
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 8.7e-14 80.9 49 73.5
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 1.5e-13 80.1 42 85.7
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 2.8e-12 75.9 72 56.9
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 6.2e-12 74.7 91 49.5
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 8.1e-12 74.3 38 84.2
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 1.4e-11 73.6 57 54.4
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 5.3e-11 71.6 69 55.1
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 1.5e-10 70.1 54 55.6
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 1.7e-09 66.6 34 85.3
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 3.8e-09 65.5 101 29.7
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 5.4e-08 61.6 96 32.3
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 4.6e-07 58.5 65 47.7


User provided reference genes

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