Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.7e-51 204.9 95 100.0
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 2.4e-39 165.2 96 81.2
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.6e-38 161.8 96 82.3
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-37 158.7 96 80.2
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.9e-37 158.3 96 78.1
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 2.9e-37 158.3 96 74.0
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 2.9e-37 158.3 96 74.0
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 3.2e-36 154.8 96 78.1
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 3.2e-36 154.8 96 78.1
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 9.4e-36 153.3 96 77.1
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 9.4e-36 153.3 96 77.1
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 2.3e-34 148.7 96 72.9
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 2.3e-34 148.7 96 72.9
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 2.3e-34 148.7 96 72.9
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 8.2e-32 140.2 96 70.8
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 8.2e-32 140.2 96 70.8
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-30 136.0 96 70.8
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-30 136.0 96 70.8
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 8.5e-29 130.2 96 67.7
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 8.5e-29 130.2 96 67.7
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 8.5e-29 130.2 96 67.7
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 4.5e-14 81.3 77 55.8
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.3e-13 79.7 79 53.2
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 5.0e-13 77.8 80 51.2
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.5e-12 76.3 79 53.2
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.5e-12 75.5 79 53.2
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.5e-12 75.5 79 53.2
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 4.2e-12 74.7 71 49.3
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 4.2e-12 74.7 80 50.0
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.2e-12 74.7 76 52.6
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.2e-11 73.2 83 45.8
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 2.1e-11 72.4 77 51.9
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 2.8e-11 72.0 76 50.0
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 4.7e-11 71.2 35 91.4
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.0e-11 70.5 76 47.4
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.0e-11 70.5 76 47.4
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 8.0e-11 70.5 76 47.4
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 8.0e-11 70.5 82 45.1
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.0e-10 70.1 84 44.0
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 1.0e-10 70.1 84 47.6
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.8e-10 69.3 76 46.1
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 2.3e-10 68.9 85 47.1
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 3.0e-10 68.6 75 45.3
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 4.0e-10 68.2 76 47.4
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 5.2e-10 67.8 93 45.2
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 6.8e-10 67.4 72 45.8
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 6.8e-10 67.4 90 40.0
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.8e-10 67.4 77 48.1
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 8.8e-10 67.0 80 45.0
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.2e-09 66.6 83 42.2
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.5e-09 66.2 77 48.1
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.5e-09 66.2 77 48.1
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 1.5e-09 66.2 83 42.2
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.0e-09 65.9 72 48.6
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 2.0e-09 65.9 83 48.2
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.0e-09 65.9 83 48.2
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.0e-09 65.9 83 48.2
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 2.0e-09 65.9 80 42.5
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 3.4e-09 65.1 76 47.4
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 3.4e-09 65.1 71 47.9
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.4e-09 64.7 83 47.0
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 7.5e-09 63.9 40 70.0
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 9.8e-09 63.5 72 52.8
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.3e-08 63.2 79 41.8
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-08 62.8 82 46.3
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 2.2e-08 62.4 62 48.4
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.2e-08 62.4 83 39.8
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 2.8e-08 62.0 39 66.7
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 2.8e-08 62.0 39 66.7
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.8e-08 62.0 71 52.1
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 3.7e-08 61.6 76 43.4
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 4.9e-08 61.2 91 38.5
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 4.9e-08 61.2 88 43.2
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 4.9e-08 61.2 91 38.5
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 4.9e-08 61.2 88 43.2
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 4.9e-08 61.2 88 43.2
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 4.9e-08 61.2 88 43.2
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 6.3e-08 60.8 73 42.5
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 8.3e-08 60.5 86 44.2
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.1e-07 60.1 57 56.1
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 1.4e-07 59.7 70 44.3
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 1.4e-07 59.7 80 38.8
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.4e-07 59.7 77 42.9
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-07 59.3 70 44.3
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-07 59.3 70 44.3
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 1.8e-07 59.3 70 44.3
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 1.8e-07 59.3 54 50.0
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 3.1e-07 58.5 56 51.8
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 7.0e-07 57.4 76 48.7
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 7.0e-07 57.4 77 41.6
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 9.2e-07 57.0 94 38.3
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 9.2e-07 57.0 54 48.1
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-06 56.6 81 42.0
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 1.2e-06 56.6 75 44.0
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.2e-06 56.6 81 43.2
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.2e-06 56.6 75 45.3
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 2.0e-06 55.8 55 49.1
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 2.0e-06 55.8 31 74.2
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 2.0e-06 55.8 31 74.2
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 2.0e-06 55.8 31 74.2
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 3.5e-06 55.1 85 42.4
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 3.5e-06 55.1 77 40.3
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 4.5e-06 54.7 25 88.0
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.5e-06 54.7 85 40.0
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 5.9e-06 54.3 29 75.9
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 5.9e-06 54.3 76 38.2
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 7.8e-06 53.9 36 63.9
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 7.8e-06 53.9 36 63.9
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 7.8e-06 53.9 36 63.9
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 7.8e-06 53.9 78 38.5
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 7.8e-06 53.9 74 41.9
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 7.8e-06 53.9 29 75.9


User provided reference genes

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