Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR093000 Cardamine hirsuta HOM05D007737 ORTHO05D009754 3.6e-60 235.0 138 100.0
C01p46550 Brassica napus HOM05D007737 ORTHO05D009754 2.7e-44 182.2 138 80.4
Sp3g15800 Schrenkiella parvula HOM05D007737 ORTHO05D009754 2.7e-44 182.2 138 81.2
BraA01t03730Z Brassica rapa HOM05D007737 ORTHO05D009754 3.6e-44 181.8 138 79.0
BcaC09g48726 Brassica carinata HOM05D001802 ORTHO05D001788 8.0e-44 180.6 138 79.7
Thhalv10021734m.g Eutrema salsugineum HOM05D007737 ORTHO05D009754 1.0e-43 180.3 140 82.1
AL3G30770 Arabidopsis lyrata HOM05D007737 ORTHO05D009754 3.0e-43 178.7 138 79.7
AT3G17668 Arabidopsis thaliana HOM05D007737 ORTHO05D009754 1.2e-42 176.8 136 81.6
BcaB04g20827 Brassica carinata HOM05D001802 ORTHO05D001788 4.4e-42 174.9 138 81.2
Carub.0003s1738 Capsella rubella HOM05D007737 ORTHO05D009754 2.2e-41 172.6 135 77.8
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 2.5e-29 132.5 123 61.0
THA.LOC104806480 Tarenaya hassleriana HOM05D007737 ORTHO05D009754 8.3e-25 117.5 122 64.8
arahy.Tifrunner.gnm1.ann1.HH45UC Arachis hypogaea HOM05D007737 ORTHO05D009754 8.6e-22 107.5 114 55.3
arahy.Tifrunner.gnm1.ann1.BW18VB Arachis hypogaea HOM05D007737 ORTHO05D009754 1.1e-21 107.1 114 55.3
Glyma.02G276300 Glycine max HOM05D007737 ORTHO05D009754 1.1e-21 107.1 113 55.8
Potri.014G179800 Populus trichocarpa HOM05D007737 ORTHO05D009754 3.3e-21 105.5 120 60.8
Dinv43570 Davidia involucrata HOM05D007737 ORTHO05D009754 4.3e-21 105.1 113 51.3
CsaV3_6G006540 Cucumis sativus L. HOM05D007737 ORTHO05D009754 5.6e-21 104.8 101 62.4
Lalb_Chr17g0347681 Lupinus albus HOM05D007737 ORTHO05D009754 5.6e-21 104.8 110 57.3
Solyc06g051160.4 Solanum lycopersicum HOM05D007737 ORTHO05D009754 7.3e-21 104.4 115 41.7
Thecc.10G000900 Theobroma cacao HOM05D007737 ORTHO05D009754 7.3e-21 104.4 135 51.9
Eucgr.D01138 Eucalyptus grandis HOM05D007737 ORTHO05D009754 1.2e-20 103.6 130 50.8
Manes.12G126400 Manihot esculenta HOM05D007737 ORTHO05D009754 1.2e-20 103.6 113 44.2
PGSC0003DMG400015652 Solanum tuberosum HOM05D007737 ORTHO05D009754 2.1e-20 102.8 101 44.6
Ciclev10022762m.g Citrus clementina HOM05D007737 ORTHO05D009754 6.1e-20 101.3 98 55.1
HanXRQChr06g0168511 Helianthus annuus HOM05D007737 ORTHO05D009754 6.1e-20 101.3 101 46.5
MD02G1228500 Malus domestica HOM05D007737 ORTHO05D009754 6.1e-20 101.3 132 49.2
Sabra14G0139900 Salix brachista HOM05D007737 ORTHO05D009754 6.1e-20 101.3 105 44.8
TWI23G0770 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 6.1e-20 101.3 132 44.7
CAN.G1183.16 Capsicum annuum HOM05D007737 ORTHO05D009754 1.0e-19 100.5 105 57.1
Lsat_1_v5_gn_7_11721 Lactuca sativa HOM05D007737 ORTHO05D009754 1.8e-19 99.8 101 44.6
Phvul.008G205200 Phaseolus vulgaris HOM05D007737 ORTHO05D009754 2.3e-19 99.4 113 54.0
LjContig00564g0006359 Lotus japonicus HOM05D007737 ORTHO05D009754 3.1e-19 99.0 101 57.4
Psat0s2829g0120 Pisum sativum HOM05D007737 ORTHO05D009754 3.1e-19 99.0 113 45.1
Psat0s4349g0040 Pisum sativum HOM05D007737 ORTHO05D009754 3.1e-19 99.0 113 45.1
Psat0s4932g0040 Pisum sativum HOM05D007737 ORTHO05D009754 3.1e-19 99.0 113 48.7
Oeu029042.1 Olea europaea HOM05D007737 ORTHO05D009754 4.0e-19 98.6 111 40.5
MSTRG.4970 Avicennia marina HOM05D007737 ORTHO05D009754 6.8e-19 97.8 113 40.7
PGR119G2515 Punica granatum HOM05D007737 ORTHO05D009754 6.8e-19 97.8 110 47.3
Sed0019089 Sechium edule HOM05D007737 ORTHO05D009754 6.8e-19 97.8 101 58.4
TAR375G1083 Trochodendron aralioides HOM05D007737 ORTHO05D009754 6.8e-19 97.8 131 46.6
CSS0024286 Camellia sinensis var. sinensis HOM05D007737 ORTHO05D009754 8.9e-19 97.4 120 50.0
Gohir.A05G333700 Gossypium hirsutum HOM05D007737 ORTHO05D009754 8.9e-19 97.4 99 45.5
CiPaw.13G019700 Carya illinoinensis HOM05D007737 ORTHO05D009754 1.2e-18 97.1 96 65.6
Gohir.D04G072800 Gossypium hirsutum HOM05D007737 ORTHO05D009754 1.5e-18 96.7 99 45.5
Gorai.012G081800 Gossypium raimondii HOM05D007737 ORTHO05D009754 1.5e-18 96.7 99 45.5
RcHm_v2.0_Chr0c20g0500251 Rosa chinensis HOM05D007737 ORTHO05D009754 1.5e-18 96.7 103 41.7
GSVIVG01018401001 Vitis vinifera HOM05D007737 ORTHO05D009754 1.5e-18 96.7 114 60.5
Sc02g0003320 Simmondsia chinensis HOM05D007737 ORTHO05D009754 2.0e-18 96.3 106 57.5
TWI14G0846 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 2.0e-18 96.3 114 47.4
Duzib128G0131 Durio zibethinus HOM05D007737 ORTHO05D009754 3.4e-18 95.5 100 54.0
Hma1.2p1_0601F.1_g187210 Hydrangea macrophylla HOM05D007737 ORTHO05D009754 3.4e-18 95.5 128 40.6
PSO210G3843 Papaver somniferum HOM05D007737 ORTHO05D009754 3.4e-18 95.5 100 66.0
ECA236G0282 Erigeron canadensis HOM05D007737 ORTHO05D009754 4.4e-18 95.1 122 48.4
PSO210G3425 Papaver somniferum HOM05D007737 ORTHO05D009754 4.4e-18 95.1 98 67.3
arahy.Tifrunner.gnm1.ann1.J0MG2W Arachis hypogaea HOM05D007737 ORTHO05D009754 5.8e-18 94.7 97 46.4
DCAR_029388 Daucus carota HOM05D007737 ORTHO05D009754 9.8e-18 94.0 117 46.2
Migut.N01704 Erythranthe guttata HOM05D007737 ORTHO05D009754 9.8e-18 94.0 100 42.0
QL04p025132 Quercus lobata HOM05D007737 ORTHO05D009754 9.8e-18 94.0 131 47.3
Cc02_g25850 Coffea canephora HOM05D007737 ORTHO05D009754 1.3e-17 93.6 110 43.6
CANSAT35G0994 Cannabis sativa HOM05D007737 ORTHO05D009754 2.9e-17 92.4 119 46.2
FvH4_7g08430 Fragaria vesca HOM05D007737 ORTHO05D009754 6.4e-17 91.3 103 55.3
SalBow4G2387 Salvia bowleyana HOM05D007737 ORTHO05D009754 1.4e-16 90.1 151 33.8
AUR62023349 Chenopodium quinoa HOM05D007737 ORTHO05D009754 2.4e-16 89.4 121 51.2
FAN03G2224 Fragaria x ananassa HOM05D007737 ORTHO05D009754 4.1e-16 88.6 103 54.4
Actinidia30967 Actinidia chinensis HOM05D007737 ORTHO05D009754 1.2e-15 87.0 110 38.2
COL.COLO4_19346 Corchorus olitorius HOM05D007737 ORTHO05D009754 4.6e-15 85.1 135 36.3
Nitab4.5_0011440g0030 Nicotiana tabacum HOM05D007737 ORTHO05D009754 7.8e-15 84.3 101 38.6
Atru.chr5.19 Acer truncatum HOM05D007737 ORTHO05D009754 1.0e-14 84.0 101 53.5
AUR62013808 Chenopodium quinoa HOM05D007737 ORTHO05D009754 5.0e-14 81.6 112 50.9
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 6.6e-14 81.3 82 43.9
Os04g0589200 Oryza sativa ssp. japonica HOM05D007737 ORTHO05D009754 8.6e-14 80.9 99 50.5
Actinidia05801 Actinidia chinensis HOM05D007737 ORTHO05D009754 1.9e-13 79.7 113 35.4
A01p36650 Brassica napus HOM05D007737 ORTHO05D009754 2.5e-13 79.3 50 86.0
FAN10G0020 Fragaria x ananassa HOM05D007737 ORTHO05D009754 5.6e-13 78.2 90 55.6
Prupe.2G111200 Prunus persica HOM05D007737 ORTHO05D009754 2.8e-12 75.9 90 64.4
Sopen06g017020 Solanum pennellii HOM05D007737 ORTHO05D009754 4.7e-12 75.1 80 42.5
unitig_22.g5837 Utricularia gibba HOM05D007737 ORTHO05D009754 1.1e-11 73.9 75 61.3
SGA_v2.0_scaffold77G25232 Striga asiatica HOM05D007737 ORTHO05D009754 6.8e-11 71.2 91 36.3
HPP92_007265 Vanilla planifolia HOM05D007737 ORTHO05D009754 1.2e-10 70.5 91 62.6
AagrBONN_evm.TU.Sc2ySwM_344.418 Anthoceros agrestis HOM05D007737 ORTHO05D009754 2.9e-09 65.9 98 42.9
Mapoly0099s0043 Marchantia polymorpha HOM05D007737 ORTHO05D009754 3.7e-09 65.5 85 52.9
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 2.4e-08 62.8 61 42.6
Nitab4.5_0000507g0110 Nicotiana tabacum HOM05D007737 ORTHO05D009754 1.2e-07 60.5 66 42.4
ClCG06G000750 Citrullus lanatus HOM05D007737 ORTHO05D009754 5.1e-06 55.1 66 47.0
Aqoxy3G02490 Aquilegia oxysepala HOM05D007737 ORTHO05D009754 6.6e-06 54.7 110 45.5


User provided reference genes

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