Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR092550 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.4e-25 118.6 51 100.0
CARHR092590 Cardamine hirsuta HOM05D000209 ORTHO05D000129 8.7e-12 72.8 50 64.0
AT3G17540 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.6e-10 68.6 50 62.0
C05p45160 Brassica napus HOM05D000209 ORTHO05D000129 5.3e-09 63.5 46 58.7
Carub.0004s0385 Capsella rubella HOM05D000209 ORTHO05D000129 5.3e-09 63.5 47 63.8
AL3G30320 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 6.9e-09 63.2 50 60.0
BraA05t21838Z Brassica rapa HOM05D000209 ORTHO05D000129 1.5e-08 62.0 46 58.7
CARHR092860 Cardamine hirsuta HOM05D000209 ORTHO05D000129 3.4e-08 60.8 50 54.0
AT3G17530 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 4.4e-08 60.5 50 58.0
AT3G17490 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 5.8e-08 60.1 50 52.0
BcaB06g26443 Brassica carinata HOM05D000209 ORTHO05D000129 5.8e-08 60.1 46 56.5
BcaC09g49247 Brassica carinata HOM05D000209 ORTHO05D000129 5.8e-08 60.1 46 60.9
A01p31960 Brassica napus HOM05D000209 ORTHO05D000129 5.8e-08 60.1 46 60.9
BraA01t03322Z Brassica rapa HOM05D000209 ORTHO05D000129 5.8e-08 60.1 46 60.9
BcaC05g27969 Brassica carinata HOM05D000209 ORTHO05D000129 7.6e-08 59.7 46 56.5
BcaC05g27971 Brassica carinata HOM05D000209 ORTHO05D000129 7.6e-08 59.7 46 56.5
C05p39770 Brassica napus HOM05D000209 ORTHO05D000129 7.6e-08 59.7 46 56.5
BolC5t32720H Brassica oleracea HOM05D000209 ORTHO05D000129 7.6e-08 59.7 46 56.5
Thhalv10022425m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 7.6e-08 59.7 50 60.0
A01p31970 Brassica napus HOM05D000209 ORTHO05D000129 9.9e-08 59.3 46 58.7
BraA01t03323Z Brassica rapa HOM05D000209 ORTHO05D000129 9.9e-08 59.3 46 58.7
Carub.0003s1724 Capsella rubella HOM05D000209 ORTHO05D000129 9.9e-08 59.3 50 50.0
AT3G17280 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.3e-07 58.9 50 54.0
AL3G29750 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.7e-07 58.5 50 52.0
AL4G22750 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.8e-07 57.4 51 47.1
Carub.0004s0830 Capsella rubella HOM05D000209 ORTHO05D000129 3.8e-07 57.4 51 49.0
CARHR108200 Cardamine hirsuta HOM05D000209 ORTHO05D000129 3.8e-07 57.4 46 60.9
Thhalv10022281m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 4.9e-07 57.0 46 60.9
AL5G24180 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 6.4e-07 56.6 50 54.0
AT3G21120 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 6.4e-07 56.6 46 56.5
BcaC02g12696 Brassica carinata HOM05D000209 ORTHO05D000129 6.4e-07 56.6 49 55.1
BolC1t04046H Brassica oleracea HOM05D000209 ORTHO05D000129 6.4e-07 56.6 46 58.7
AL3G35160 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 8.4e-07 56.2 46 58.7
BcaB02g10954 Brassica carinata HOM05D000209 ORTHO05D000129 8.4e-07 56.2 54 55.6
BcaNung01175 Brassica carinata HOM05D000209 ORTHO05D000129 8.4e-07 56.2 51 52.9
AL3G29740 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.1e-06 55.8 50 52.0
AL3G35150 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.1e-06 55.8 46 58.7
CARHR248580 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.1e-06 55.8 52 51.9
Thhalv10022393m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.1e-06 55.8 54 48.1
AL3G30630 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.4e-06 55.5 51 51.0
Carub.0003s1721 Capsella rubella HOM05D000209 ORTHO05D000129 1.4e-06 55.5 51 45.1
Thhalv10003000m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.4e-06 55.5 51 47.1
Thhalv10021906m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.4e-06 55.5 46 58.7
AT3G17320 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.9e-06 55.1 50 52.0
BcaC01g05687 Brassica carinata HOM05D000209 ORTHO05D000129 1.9e-06 55.1 51 49.0
C03p23190 Brassica napus HOM05D000209 ORTHO05D018688 1.9e-06 55.1 51 49.0
BolC3t14720H Brassica oleracea HOM05D000209 ORTHO05D018688 1.9e-06 55.1 51 49.0
BolC8t48202H Brassica oleracea HOM05D000209 ORTHO05D000129 1.9e-06 55.1 47 53.2
Thhalv10022074m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.9e-06 55.1 50 52.0
Thhalv10022140m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.9e-06 55.1 46 56.5
AL3G30330 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.4e-06 54.7 46 54.3
AT2G24510 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 2.4e-06 54.7 50 52.0
AT3G21130 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 2.4e-06 54.7 46 58.7
BcaB04g20852 Brassica carinata HOM05D000209 ORTHO05D000129 2.4e-06 54.7 50 52.0
A05p18310 Brassica napus HOM05D000209 ORTHO05D000129 2.4e-06 54.7 50 54.0
A05p32830 Brassica napus HOM05D000389 ORTHO05D000287 2.4e-06 54.7 50 46.0
BraA05t20724Z Brassica rapa HOM05D000209 ORTHO05D000129 2.4e-06 54.7 50 54.0
Sp4g04370 Schrenkiella parvula HOM05D000209 ORTHO05D000129 2.4e-06 54.7 46 47.8
AT3G13680 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 3.2e-06 54.3 51 49.0
AT3G17480 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 3.2e-06 54.3 51 47.1
BcaB04g18933 Brassica carinata HOM05D000209 ORTHO05D000129 3.2e-06 54.3 47 46.8
BolC4t21842H Brassica oleracea HOM05D000209 ORTHO05D000129 3.2e-06 54.3 49 51.0
BcaB04g17085 Brassica carinata HOM05D000209 ORTHO05D000129 4.2e-06 53.9 51 51.0
BcaB04g19147 Brassica carinata HOM05D000209 ORTHO05D000129 4.2e-06 53.9 46 54.3
C07p29420 Brassica napus HOM05D000209 ORTHO05D000129 4.2e-06 53.9 46 54.3
BolC6t35985H Brassica oleracea HOM05D000209 ORTHO05D000129 4.2e-06 53.9 52 50.0
Carub.0003s1727 Capsella rubella HOM05D000209 ORTHO05D000129 4.2e-06 53.9 46 50.0
CARHR108190 Cardamine hirsuta HOM05D000209 ORTHO05D000129 4.2e-06 53.9 46 58.7
Thhalv10022189m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 4.2e-06 53.9 46 56.5
BcaB04g20851 Brassica carinata HOM05D000209 ORTHO05D000129 5.4e-06 53.5 46 54.3
BolC4t21828H Brassica oleracea HOM05D000209 ORTHO05D000129 5.4e-06 53.5 49 51.0
Thhalv10015377m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 5.4e-06 53.5 46 50.0
Thhalv10015889m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 5.4e-06 53.5 46 52.2
AL3G35140 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 7.1e-06 53.1 38 55.3
A01p10790 Brassica napus HOM05D000209 ORTHO05D000129 7.1e-06 53.1 51 52.9
C03p51510 Brassica napus HOM05D000209 ORTHO05D000129 7.1e-06 53.1 46 54.3
BraA01t01025Z Brassica rapa HOM05D000209 ORTHO05D000129 7.1e-06 53.1 51 52.9
CARHR120360 Cardamine hirsuta HOM05D000209 ORTHO05D000129 7.1e-06 53.1 46 47.8
Thhalv10002999m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 7.1e-06 53.1 46 50.0
Thhalv10026929m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 7.1e-06 53.1 47 51.1
AL3G29670 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 9.3e-06 52.8 49 51.0
AL3G30850 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 9.3e-06 52.8 46 54.3
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 9.3e-06 52.8 46 52.2
AT3G22350 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 9.3e-06 52.8 46 52.2
BolC3t17165H Brassica oleracea HOM05D000209 ORTHO05D000129 9.3e-06 52.8 51 49.0
Carub.0003s1761 Capsella rubella HOM05D000209 ORTHO05D000129 9.3e-06 52.8 51 45.1
CARHR078400 Cardamine hirsuta HOM05D000209 ORTHO05D000129 9.3e-06 52.8 54 51.9
CARHR257260 Cardamine hirsuta HOM05D000209 ORTHO05D000129 9.3e-06 52.8 51 47.1


User provided reference genes

Program Settings