Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 2.6e-239 831.6 421 100.0
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 5.5e-205 717.6 399 89.5
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.8e-203 712.6 399 89.0
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 6.3e-201 704.1 399 88.0
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 1.8e-200 702.6 400 88.2
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 6.1e-196 687.6 400 86.2
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 8.0e-196 687.2 403 86.1
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.0e-195 686.8 403 86.1
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 1.0e-195 686.8 401 86.5
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.2e-194 683.3 401 86.3
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 1.3e-193 679.9 401 85.8
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 1.5e-186 656.4 399 81.5
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 2.1e-172 609.4 400 77.5
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 4.0e-147 525.4 400 68.8
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 2.0e-146 523.1 391 66.5
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 4.5e-146 521.9 408 64.2
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 5.8e-146 521.5 413 64.6
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 4.2e-144 515.4 409 65.3
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 2.7e-143 512.7 407 64.6
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 6.0e-143 511.5 413 63.9
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 6.0e-143 511.5 413 63.9
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 1.5e-141 506.9 400 64.8
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 5.6e-141 505.0 400 63.8
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 7.4e-141 504.6 399 65.2
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.1e-139 500.7 392 64.0
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 4.0e-139 498.8 400 63.2
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.2e-138 497.3 400 63.2
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 3.4e-138 495.7 392 62.8
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.3e-137 493.8 399 62.9
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 1.7e-137 493.4 403 63.0
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 6.4e-137 491.5 390 62.3
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 8.4e-137 491.1 402 61.7
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 1.1e-136 490.7 401 62.1
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 2.4e-136 489.6 386 63.7
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.2e-135 487.3 392 62.5
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 2.1e-135 486.5 386 63.7
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 2.3e-134 483.0 397 62.2
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 3.9e-134 482.3 410 61.2
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 1.6e-132 476.9 407 60.2
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.8e-132 476.1 413 59.6
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 8.2e-132 474.6 401 60.6
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.8e-131 473.4 402 60.2
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.4e-131 473.0 413 59.1
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 2.4e-131 473.0 401 62.1
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 3.1e-131 472.6 395 61.3
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 5.3e-131 471.9 410 60.0
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 5.3e-131 471.9 402 60.7
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 1.2e-130 470.7 394 60.4
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 5.8e-130 468.4 397 61.5
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 7.6e-130 468.0 400 61.2
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 1.7e-129 466.8 407 58.2
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 2.2e-129 466.5 394 59.9
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 2.2e-129 466.5 414 58.9
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 4.9e-129 465.3 404 61.1
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.5e-128 463.0 432 55.8
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 3.2e-128 462.6 392 59.2
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.2e-128 462.2 406 58.1
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 4.2e-128 462.2 396 60.6
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 5.5e-128 461.8 407 59.2
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 7.1e-128 461.5 398 59.3
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 1.6e-127 460.3 390 61.5
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.6e-127 460.3 402 59.5
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 7.9e-127 458.0 392 60.2
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.8e-126 456.8 403 58.8
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 8.7e-126 454.5 416 58.9
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.1e-125 454.1 395 59.2
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 1.1e-125 454.1 410 56.8
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 1.5e-125 453.8 372 62.4
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 3.3e-125 452.6 404 58.7
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.3e-125 452.6 404 57.4
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 3.3e-125 452.6 395 59.0
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 4.3e-125 452.2 403 58.3
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 9.7e-125 451.1 408 58.8
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 2.8e-124 449.5 413 57.9
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 2.4e-123 446.4 400 59.2
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 2.4e-123 446.4 396 57.8
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 9.0e-123 444.5 409 57.7
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.0e-122 443.4 398 59.5
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 5.9e-122 441.8 403 60.3
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 1.0e-121 441.0 394 60.2
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 2.9e-121 439.5 408 56.6
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 1.0e-118 431.0 405 55.6
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 1.5e-117 427.2 401 57.1
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.5e-117 426.4 404 55.7
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 2.2e-116 423.3 399 56.4
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 2.8e-116 422.9 396 56.3
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 4.8e-116 422.2 390 54.9
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 5.0e-113 412.1 384 56.8
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 6.5e-113 411.8 366 56.8
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 3.8e-105 386.0 384 54.9
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.8e-102 377.1 405 51.4
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 3.1e-99 366.3 399 52.1
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 1.8e-94 350.5 398 47.2
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 1.2e-90 337.8 398 47.7
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 5.9e-90 335.5 259 64.1
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 2.3e-81 307.0 287 55.7
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 2.8e-76 290.0 407 40.3
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 2.9e-73 280.0 402 38.8
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 4.1e-67 259.6 396 40.4
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.1e-63 247.3 346 40.2
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 6.6e-57 225.7 392 38.5
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.6e-50 204.5 346 37.3
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.0e-49 201.8 364 37.4
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 7.8e-34 149.1 99 69.7
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 1.8e-30 137.9 92 76.1
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 5.8e-29 132.9 260 33.8
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 9.3e-27 125.6 94 70.2
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 2.1e-26 124.4 87 65.5
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 4.5e-21 106.7 113 52.2
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 2.4e-14 84.3 74 59.5
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.7e-12 78.2 63 55.6
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 8.7e-09 65.9 64 50.0


User provided reference genes

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