Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 8.5e-128 460.3 225 100.0
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 2.6e-116 422.2 223 91.5
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 8.3e-115 417.2 219 91.3
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 1.8e-114 416.0 221 90.0
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 5.9e-113 411.0 222 88.7
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 1.0e-112 410.2 225 88.0
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 1.0e-112 410.2 225 88.0
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 1.0e-112 410.2 225 88.0
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 1.0e-112 410.2 217 90.3
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 1.3e-112 409.8 222 88.7
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 1.7e-112 409.5 221 89.6
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 1.7e-112 409.5 225 87.6
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 1.1e-106 390.2 225 84.4
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 8.0e-102 374.0 225 82.2
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 8.3e-83 310.8 221 66.1
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 1.4e-82 310.1 221 65.6
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 5.4e-82 308.1 221 65.6
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 9.2e-82 307.4 222 64.9
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 3.5e-81 305.4 223 63.2
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 4.6e-81 305.1 225 63.1
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 6.0e-81 304.7 223 65.0
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 6.0e-81 304.7 220 64.1
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 1.3e-80 303.5 223 62.8
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 1.7e-80 303.1 223 64.6
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 3.0e-80 302.4 217 63.1
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 5.1e-80 301.6 215 63.7
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 6.6e-80 301.2 217 63.1
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.1e-79 300.4 214 63.1
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 5.6e-79 298.1 225 63.6
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 7.3e-79 297.7 221 62.4
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 7.3e-79 297.7 218 63.8
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 9.5e-79 297.4 217 61.8
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 1.6e-78 296.6 217 62.7
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 8.1e-78 294.3 222 60.4
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 1.1e-77 293.9 220 61.4
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 1.4e-77 293.5 220 61.8
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 1.8e-77 293.1 213 63.8
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 1.8e-77 293.1 220 61.8
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 1.8e-77 293.1 223 60.1
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 3.1e-77 292.4 222 61.3
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 4.0e-77 292.0 221 61.5
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 5.2e-77 291.6 218 61.5
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 6.8e-77 291.2 215 60.9
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 6.8e-77 291.2 220 60.5
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 6.8e-77 291.2 221 60.2
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 8.9e-77 290.8 214 64.0
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 1.2e-76 290.4 220 62.3
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 2.0e-76 289.7 222 60.8
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 3.4e-76 288.9 216 61.1
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 5.8e-76 288.1 221 60.2
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 5.8e-76 288.1 175 77.1
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 1.7e-75 286.6 231 61.9
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 1.7e-75 286.6 217 57.6
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 2.2e-75 286.2 215 60.5
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 2.2e-75 286.2 222 62.2
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 3.7e-75 285.4 226 61.5
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 4.9e-75 285.0 215 61.4
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 6.4e-75 284.6 219 59.4
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 8.4e-75 284.3 235 60.0
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 1.4e-74 283.5 214 60.7
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 1.4e-74 283.5 219 58.0
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 1.9e-74 283.1 211 60.7
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 1.9e-74 283.1 203 64.5
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 4.1e-74 282.0 213 60.6
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 4.1e-74 282.0 218 58.7
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 5.4e-74 281.6 218 59.6
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 7.1e-74 281.2 215 59.5
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 7.1e-74 281.2 216 60.2
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 1.2e-73 280.4 183 69.9
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 1.2e-73 280.4 213 60.1
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 2.1e-73 279.6 217 59.0
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 3.5e-73 278.9 215 60.5
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 6.0e-73 278.1 218 58.7
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 7.8e-73 277.7 221 60.2
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 7.8e-73 277.7 220 57.7
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 1.0e-72 277.3 189 76.2
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 2.3e-72 276.2 220 57.3
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 6.6e-72 274.6 215 58.6
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 1.1e-71 273.9 216 57.4
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 1.9e-71 273.1 216 58.3
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 2.5e-71 272.7 213 58.2
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 9.6e-71 270.8 212 58.5
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 9.6e-71 270.8 216 57.9
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 1.6e-70 270.0 220 55.5
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 2.8e-70 269.2 215 58.1
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 1.1e-69 267.3 274 47.1
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 8.9e-69 264.2 213 56.8
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 8.9e-69 264.2 218 53.7
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 2.9e-67 259.2 208 55.3
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 6.4e-67 258.1 211 57.8
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 1.1e-66 257.3 211 57.8
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 2.7e-65 252.7 209 56.9
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 3.5e-65 252.3 209 56.9
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 8.7e-64 247.7 211 55.0
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 8.1e-62 241.1 175 62.9
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 3.1e-61 239.2 217 52.1
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 6.9e-61 238.0 218 50.5
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 2.9e-59 232.6 175 62.3
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 3.2e-58 229.2 213 52.6
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 1.0e-56 224.2 174 61.5
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 1.3e-56 223.8 248 45.2
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 6.6e-56 221.5 181 58.0
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 8.7e-56 221.1 215 48.8
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 1.4e-53 213.8 218 47.2
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 1.3e-51 207.2 218 41.3
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 2.9e-51 206.1 216 45.4
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 1.1e-50 204.1 213 46.0
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 1.2e-49 200.7 215 47.0
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 1.3e-48 197.2 153 60.8
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.8e-48 196.8 213 46.0
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 3.9e-48 195.7 213 42.7
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 1.9e-47 193.4 159 57.9
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 5.3e-45 185.3 208 41.3
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 5.5e-42 175.3 159 50.9
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 7.4e-39 164.9 136 55.1
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.5e-36 157.1 166 47.0
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 5.9e-36 155.2 113 62.8
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 4.1e-29 132.5 220 31.4
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 2.0e-28 130.2 82 72.0
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 1.0e-24 117.9 112 51.8
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 7.4e-23 111.7 158 45.6
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 5.0e-19 99.0 98 48.0
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 3.9e-16 89.4 221 26.7
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 4.1e-13 79.3 97 43.3
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 1.2e-12 77.8 54 63.0
CBR_g56708 Chara braunii HOM05D009436 ORTHO05D000048 4.5e-12 75.9 102 33.3
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 1.5e-10 70.9 43 67.4
Lalb_Chr20g0120891 Lupinus albus HOM05D006322 ORTHO05D007716 2.2e-06 57.0 45 53.3


User provided reference genes

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