Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR092080 Cardamine hirsuta HOM05D000209 ORTHO05D014056 8.6e-34 146.4 71 100.0
AL3G29780 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.7e-13 79.0 67 62.7
AL3G53140 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.9e-13 78.2 70 58.6
Carub.0003s1761 Capsella rubella HOM05D000209 ORTHO05D000129 3.7e-13 77.8 65 60.0
AL3G30730 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.9e-12 75.5 71 52.1
AT3G17320 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.9e-12 75.5 63 55.6
AT3G17620 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 2.4e-12 75.1 71 54.9
AT3G16740 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 7.1e-12 73.6 69 52.2
AL3G30480 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.2e-11 72.8 75 53.3
AL2G18120 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.1e-11 72.0 62 48.4
AL3G53160 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.1e-11 72.0 70 57.1
AL3G38080 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.5e-11 71.2 72 56.9
AL6G52510 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.6e-11 70.9 67 55.2
Carub.0003s1760 Capsella rubella HOM05D000209 ORTHO05D000129 6.0e-11 70.5 74 52.7
CARHR092940 Cardamine hirsuta HOM05D000209 ORTHO05D000129 7.8e-11 70.1 79 45.6
BcaC06g35828 Brassica carinata HOM05D000209 ORTHO05D000129 1.0e-10 69.7 69 50.7
BolC7t41511H Brassica oleracea HOM05D000209 ORTHO05D000129 1.0e-10 69.7 69 50.7
Carub.0003s1703 Capsella rubella HOM05D000209 ORTHO05D000129 1.0e-10 69.7 63 54.0
AL3G29670 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.7e-10 68.9 69 50.7
Carub.0003s2043 Capsella rubella HOM05D000209 ORTHO05D000129 1.7e-10 68.9 76 50.0
AL3G30470 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.3e-10 68.6 75 50.7
AL3G34120 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.3e-10 68.6 72 50.0
BcaC06g35831 Brassica carinata HOM05D000209 ORTHO05D014439 2.3e-10 68.6 63 52.4
AL3G50860 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.9e-10 67.8 65 50.8
AL5G27570 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.9e-10 67.8 71 46.5
AL3G30920 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 5.1e-10 67.4 68 54.4
AT3G19470 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 5.1e-10 67.4 62 53.2
AL3G29760 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 6.6e-10 67.0 72 54.2
AT2G17830 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 6.6e-10 67.0 65 50.8
BcaNung00144 Brassica carinata HOM05D000209 ORTHO05D000129 6.6e-10 67.0 63 52.4
AL3G40130 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.1e-09 66.2 69 49.3
BcaC09g48650 Brassica carinata HOM05D000209 ORTHO05D000129 1.1e-09 66.2 63 50.8
BcaC09g48651 Brassica carinata HOM05D000209 ORTHO05D000129 1.1e-09 66.2 74 50.0
BolC1t04697H Brassica oleracea HOM05D000209 ORTHO05D000129 1.1e-09 66.2 63 50.8
BolC3t16425H Brassica oleracea HOM05D000209 ORTHO05D000129 1.1e-09 66.2 70 51.4
AT5G36200 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.9e-09 65.5 71 52.1
CARHR092160 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.9e-09 65.5 75 48.0
CARHR213520 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.9e-09 65.5 63 50.8
BraA03t12579Z Brassica rapa HOM05D000209 ORTHO05D000129 2.5e-09 65.1 70 51.4
Carub.0001s3510 Capsella rubella HOM05D000209 ORTHO05D000129 2.5e-09 65.1 67 55.2
CARHR092000 Cardamine hirsuta HOM05D000209 ORTHO05D000129 2.5e-09 65.1 73 47.9
Thhalv10020932m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 2.5e-09 65.1 64 48.4
Thhalv10022798m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 2.5e-09 65.1 70 48.6
BcaB04g20819 Brassica carinata HOM05D000209 ORTHO05D000129 3.3e-09 64.7 69 50.7
Thhalv10021978m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 3.3e-09 64.7 63 49.2
AL3G29740 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.3e-09 64.3 69 49.3
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.3e-09 64.3 69 49.3
AT2G18780 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 4.3e-09 64.3 51 60.8
AT3G16820 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 4.3e-09 64.3 69 50.7
AL1G53830 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 5.6e-09 63.9 63 52.4
A02p31300 Brassica napus HOM05D000209 ORTHO05D000129 7.3e-09 63.5 65 52.3
C01p47270 Brassica napus HOM05D000209 ORTHO05D000129 7.3e-09 63.5 63 50.8
C05p49440 Brassica napus HOM05D000209 ORTHO05D018806 7.3e-09 63.5 75 49.3
BolC5t33690H Brassica oleracea HOM05D000209 ORTHO05D000129 7.3e-09 63.5 75 49.3
BraA02t08134Z Brassica rapa HOM05D000209 ORTHO05D000129 7.3e-09 63.5 65 52.3
AL3G29770 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 9.5e-09 63.2 74 52.7
AT3G24580 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 9.5e-09 63.2 68 50.0
AT5G42460 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 9.5e-09 63.2 61 49.2
AL3G40140 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.2e-08 62.8 69 49.3
Sp3g14050 Schrenkiella parvula HOM05D000209 ORTHO05D000129 1.2e-08 62.8 66 50.0
AT3G16880 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.6e-08 62.4 66 50.0
AT3G20400 Arabidopsis thaliana HOM05D000209 ORTHO05D014439 1.6e-08 62.4 72 48.6
BcaB06g25776 Brassica carinata HOM05D000209 ORTHO05D000129 1.6e-08 62.4 69 52.2
BcaC01g03174 Brassica carinata HOM05D000209 ORTHO05D000129 1.6e-08 62.4 63 50.8
BcaC01g03175 Brassica carinata HOM05D000209 ORTHO05D000129 1.6e-08 62.4 63 50.8
BolC3t17813H Brassica oleracea HOM05D000209 ORTHO05D000129 1.6e-08 62.4 63 50.8
BolC3t17814H Brassica oleracea HOM05D000209 ORTHO05D000129 1.6e-08 62.4 63 50.8
CARHR107830 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.6e-08 62.4 63 52.4
CARHR092630 Cardamine hirsuta HOM05D000209 ORTHO05D000129 2.1e-08 62.0 64 53.1
AL3G34620 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.8e-08 61.6 75 45.3
AT3G20700 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 2.8e-08 61.6 67 44.8
BcaB04g18933 Brassica carinata HOM05D000209 ORTHO05D000129 2.8e-08 61.6 70 44.3
BcaC06g31389 Brassica carinata HOM05D000209 ORTHO05D000129 2.8e-08 61.6 59 55.9
A05p33700 Brassica napus HOM05D000209 ORTHO05D000129 2.8e-08 61.6 69 47.8
BcaC05g28838 Brassica carinata HOM05D000209 ORTHO05D000129 3.6e-08 61.2 75 48.0
CARHR107470 Cardamine hirsuta HOM05D000209 ORTHO05D000129 3.6e-08 61.2 70 47.1
A05p33670 Brassica napus HOM05D000209 ORTHO05D000129 4.7e-08 60.8 67 47.8
CARHR092560 Cardamine hirsuta HOM05D000209 ORTHO05D000129 4.7e-08 60.8 55 54.5
A01p38090 Brassica napus HOM05D000209 ORTHO05D000129 6.2e-08 60.5 63 47.6
BraA01t03792Z Brassica rapa HOM05D000209 ORTHO05D000129 6.2e-08 60.5 63 47.6
Carub.0003s1661 Capsella rubella HOM05D000209 ORTHO05D000129 6.2e-08 60.5 68 48.5
AL5G29320 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 8.1e-08 60.1 70 48.6
AT3G22940 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 8.1e-08 60.1 65 52.3
BcaC05g28939 Brassica carinata HOM05D000209 ORTHO05D000129 8.1e-08 60.1 69 47.8
BcaNung00146 Brassica carinata HOM05D000209 ORTHO05D000129 8.1e-08 60.1 63 47.6
A05p33650 Brassica napus HOM05D000209 ORTHO05D000129 8.1e-08 60.1 69 47.8
BolC5t33815H Brassica oleracea HOM05D000209 ORTHO05D000129 8.1e-08 60.1 69 47.8
BraA05t22190Z Brassica rapa HOM05D000209 ORTHO05D000129 8.1e-08 60.1 69 47.8
Thhalv10000638m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 8.1e-08 60.1 73 43.8
AL2G23590 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.1e-07 59.7 67 47.8
AL4G21820 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.1e-07 59.7 69 47.8
AT3G49510 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.1e-07 59.7 70 47.1
BcaC01g03771 Brassica carinata HOM05D000209 ORTHO05D000129 1.1e-07 59.7 70 42.9
BcaC01g03778 Brassica carinata HOM05D000209 ORTHO05D000129 1.1e-07 59.7 70 42.9
BolC3t17150H Brassica oleracea HOM05D000209 ORTHO05D000129 1.1e-07 59.7 70 42.9
AL7G17020 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.4e-07 59.3 68 44.1
C06p32980 Brassica napus HOM05D000209 ORTHO05D000129 1.4e-07 59.3 67 44.8
BolC6t38417H Brassica oleracea HOM05D000209 ORTHO05D000129 1.4e-07 59.3 67 44.8
Carub.0002s0781 Capsella rubella HOM05D000209 ORTHO05D000129 1.4e-07 59.3 68 44.1
Carub.0003s2561 Capsella rubella HOM05D000209 ORTHO05D000129 1.4e-07 59.3 69 49.3
CARHR094260 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.4e-07 59.3 66 50.0
BcaC05g28942 Brassica carinata HOM05D000209 ORTHO05D000129 1.8e-07 58.9 67 46.3
C05p50670 Brassica napus HOM05D000209 ORTHO05D000129 1.8e-07 58.9 69 46.4
C05p50700 Brassica napus HOM05D000209 ORTHO05D000129 1.8e-07 58.9 67 46.3
BolC5t33817H Brassica oleracea HOM05D000209 ORTHO05D000129 1.8e-07 58.9 67 46.3
BcaB04g20882 Brassica carinata HOM05D000209 ORTHO05D000129 2.4e-07 58.5 63 47.6
Carub.0003s1653 Capsella rubella HOM05D000209 ORTHO05D000129 2.4e-07 58.5 68 51.5
AT3G22770 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 3.1e-07 58.2 68 47.1
A03p41270 Brassica napus HOM05D000209 ORTHO05D000129 3.1e-07 58.2 76 44.7
BolC3t17334H Brassica oleracea HOM05D000209 ORTHO05D000129 3.1e-07 58.2 76 46.1
Carub.0003s1660 Capsella rubella HOM05D000209 ORTHO05D000129 3.1e-07 58.2 67 46.3
BcaB06g25681 Brassica carinata HOM05D000209 ORTHO05D000129 4.0e-07 57.8 66 45.5
BolC1t02509H Brassica oleracea HOM05D010848 ORTHO05D014439 4.0e-07 57.8 63 47.6
CARHR092620 Cardamine hirsuta HOM05D000209 ORTHO05D000129 4.0e-07 57.8 57 49.1
AT3G20690 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 5.2e-07 57.4 68 42.6
BcaC09g48583 Brassica carinata HOM05D000209 ORTHO05D000129 5.2e-07 57.4 63 46.0
CARHR192030 Cardamine hirsuta HOM05D000209 ORTHO05D000129 5.2e-07 57.4 71 50.7
C05p45320 Brassica napus HOM05D000209 ORTHO05D000129 6.8e-07 57.0 63 54.0
BolC5t33256H Brassica oleracea HOM05D000209 ORTHO05D000129 6.8e-07 57.0 63 54.0
CARHR135370 Cardamine hirsuta HOM05D000209 ORTHO05D000129 6.8e-07 57.0 69 37.7
CARHR222480 Cardamine hirsuta HOM05D000209 ORTHO05D014439 6.8e-07 57.0 70 48.6
AL2G23050 Arabidopsis lyrata HOM05D000209 ORTHO05D014056 8.9e-07 56.6 73 45.2
BcaB08g36912 Brassica carinata HOM05D000209 ORTHO05D000129 8.9e-07 56.6 64 46.9
CARHR177430 Cardamine hirsuta HOM05D000209 ORTHO05D000129 8.9e-07 56.6 69 47.8
Thhalv10022067m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 8.9e-07 56.6 60 46.7
AL6G44790 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.2e-06 56.2 66 47.0
C01p48270 Brassica napus HOM05D000209 ORTHO05D000129 1.2e-06 56.2 63 44.4
BolC1t04790H Brassica oleracea HOM05D000209 ORTHO05D000129 1.2e-06 56.2 63 44.4
CARHR108730 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.2e-06 56.2 63 49.2
AL275U10020 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.5e-06 55.8 87 43.7
AL3G25680 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.5e-06 55.8 68 45.6
AL3G29750 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.5e-06 55.8 63 50.8
BcaB02g06977 Brassica carinata HOM05D000209 ORTHO05D000129 1.5e-06 55.8 67 43.3
BcaB02g06982 Brassica carinata HOM05D000209 ORTHO05D000129 1.5e-06 55.8 67 43.3
BcaC01g03775 Brassica carinata HOM05D000209 ORTHO05D000129 1.5e-06 55.8 70 41.4
CARHR096510 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.5e-06 55.8 66 45.5
Thhalv10015430m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.5e-06 55.8 60 50.0
Thhalv10022148m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.5e-06 55.8 63 50.8
BcaC05g28848 Brassica carinata HOM05D000209 ORTHO05D000129 2.0e-06 55.5 80 43.8
BraA03t13281Z Brassica rapa HOM05D000209 ORTHO05D000129 2.0e-06 55.5 76 43.4
Carub.0003s2963 Capsella rubella HOM05D000209 ORTHO05D000129 2.0e-06 55.5 81 40.7
AL5G29310 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.6e-06 55.1 71 47.9
BcaB06g25682 Brassica carinata HOM05D000209 ORTHO05D000129 2.6e-06 55.1 69 43.5
AL3G33690 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.4e-06 54.7 76 43.4
AL3G36710 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.4e-06 54.7 65 49.2
AT3G19560 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 3.4e-06 54.7 72 44.4
Thhalv10017624m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 3.4e-06 54.7 83 38.6
AL2G23600 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.4e-06 54.3 66 45.5
AL3G28670 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.4e-06 54.3 65 44.6
AT3G19880 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 4.4e-06 54.3 68 45.6
Thhalv10001171m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 4.4e-06 54.3 60 45.0
Thhalv10017545m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 5.8e-06 53.9 82 35.4
AL2G23540 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 7.6e-06 53.5 70 42.9
AL3G34630 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 7.6e-06 53.5 71 42.3
AT3G19565 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 7.6e-06 53.5 61 49.2
C09p33240 Brassica napus HOM05D000209 ORTHO05D018806 7.6e-06 53.5 78 42.3
BolC9t56161H Brassica oleracea HOM05D022249 ORTHO05D018806 7.6e-06 53.5 78 42.3
Carub.0002s0645 Capsella rubella HOM05D000209 ORTHO05D000129 7.6e-06 53.5 55 45.5
Thhalv10017529m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 7.6e-06 53.5 59 54.2
Thhalv10021928m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 7.6e-06 53.5 44 56.8
Thhalv10023095m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 7.6e-06 53.5 74 44.6
Thhalv10027497m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 7.6e-06 53.5 82 34.1
AL3G33370 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 9.9e-06 53.1 50 54.0
AL3G34600 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 9.9e-06 53.1 65 44.6
AL3G34610 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 9.9e-06 53.1 63 47.6
Carub.0003s1977 Capsella rubella HOM05D000209 ORTHO05D000129 9.9e-06 53.1 66 45.5
Carub.0003s2633 Capsella rubella HOM05D000209 ORTHO05D000129 9.9e-06 53.1 68 42.6
CARHR096180 Cardamine hirsuta HOM05D000209 ORTHO05D000129 9.9e-06 53.1 66 45.5
Thhalv10024142m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 9.9e-06 53.1 66 42.4


User provided reference genes

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