Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.9e-77 291.6 167 100.0
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 3.2e-55 218.8 190 65.8
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.4e-50 203.4 173 69.4
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.3e-48 196.8 164 73.2
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.4e-39 166.8 165 58.2
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 1.4e-37 160.2 165 55.2
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 1.4e-37 160.2 163 58.9
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.7e-35 153.3 166 55.4
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.8e-35 152.5 166 54.8
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-31 140.6 164 48.2
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 6.1e-30 134.8 155 54.8
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 7.9e-30 134.4 160 53.1
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.0e-29 134.0 164 44.5
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.8e-29 133.3 157 51.6
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 2.3e-29 132.9 167 50.9
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 3.9e-29 132.1 160 50.6
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 5.1e-29 131.7 158 51.9
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 2.6e-28 129.4 156 53.8
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 3.3e-28 129.0 161 48.4
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 3.3e-28 129.0 166 55.4
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 3.3e-28 129.0 165 49.7
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 4.4e-28 128.6 176 49.4
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 4.4e-28 128.6 156 50.0
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 5.7e-28 128.3 163 46.6
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 9.7e-28 127.5 167 48.5
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 9.7e-28 127.5 192 50.0
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 2.2e-27 126.3 171 49.1
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.2e-27 126.3 164 50.0
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.8e-27 125.9 164 50.0
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-27 125.6 161 48.4
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 4.8e-27 125.2 156 49.4
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 4.8e-27 125.2 187 48.1
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 4.8e-27 125.2 158 48.1
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 6.3e-27 124.8 162 51.2
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 8.2e-27 124.4 155 49.7
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.1e-26 124.0 161 47.8
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.1e-26 124.0 157 50.3
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 1.4e-26 123.6 161 49.7
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.4e-26 123.6 155 50.3
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 1.8e-26 123.2 159 49.1
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 2.4e-26 122.9 169 48.5
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 6.9e-26 121.3 152 48.0
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 1.2e-25 120.6 166 43.4
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 1.2e-25 120.6 158 46.8
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 2.0e-25 119.8 158 48.1
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.0e-25 119.8 157 49.7
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 4.5e-25 118.6 176 44.3
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 5.9e-25 118.2 159 47.2
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 7.7e-25 117.9 153 47.7
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 7.7e-25 117.9 153 47.7
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.3e-24 117.1 174 45.4
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 2.2e-24 116.3 158 46.8
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 3.8e-24 115.5 173 48.6
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 3.8e-24 115.5 182 47.3
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 3.8e-24 115.5 148 50.7
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 5.0e-24 115.2 152 45.4
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 5.0e-24 115.2 159 46.5
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 6.5e-24 114.8 195 45.1
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 8.5e-24 114.4 193 45.1
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 8.5e-24 114.4 167 46.1
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-23 114.0 159 45.3
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 1.4e-23 113.6 160 45.0
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 1.9e-23 113.2 161 47.8
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 1.9e-23 113.2 161 47.8
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.9e-23 113.2 158 43.7
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.9e-23 113.2 158 43.7
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.9e-23 113.2 159 44.0
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.5e-23 112.8 159 45.3
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 7.2e-23 111.3 159 44.7
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 7.2e-23 111.3 161 44.1
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 9.4e-23 110.9 172 44.8
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.6e-22 110.2 160 45.6
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.1e-22 109.8 162 45.1
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.7e-22 109.4 159 45.3
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 4.7e-22 108.6 163 44.8
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 8.0e-22 107.8 154 44.2
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.0e-21 107.5 145 47.6
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 1.4e-21 107.1 172 46.5
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 1.4e-21 107.1 172 46.5
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 1.8e-21 106.7 173 45.7
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 1.8e-21 106.7 172 43.6
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 2.3e-21 106.3 162 39.5
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 2.3e-21 106.3 162 39.5
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.0e-21 105.9 157 43.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.9e-21 105.5 152 46.1
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.1e-20 104.0 162 43.2
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 1.5e-20 103.6 161 46.6
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-20 103.6 152 42.1
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 2.0e-20 103.2 161 47.2
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 2.6e-20 102.8 158 38.6
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 7.4e-20 101.3 156 43.6
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.3e-19 100.5 163 40.5
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-19 99.8 161 42.2
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.7e-19 99.0 165 43.0
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.3e-19 98.2 161 42.9
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 6.3e-19 98.2 146 43.2
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.0e-18 94.7 158 39.9
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 9.1e-18 94.4 157 42.7
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.6e-17 93.6 163 39.9
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.6e-17 93.6 157 40.1
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 2.6e-17 92.8 152 41.4
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 5.9e-17 91.7 143 42.7
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 7.7e-17 91.3 157 38.2
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 7.7e-17 91.3 118 43.2
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 7.7e-17 91.3 125 44.8
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.0e-16 90.9 157 43.9
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.2e-16 89.7 122 44.3
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-16 89.4 101 54.5
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-16 89.4 101 54.5
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 3.8e-16 89.0 101 54.5
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.8e-16 89.0 101 54.5
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 3.8e-16 89.0 151 39.7
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-15 87.4 136 42.6
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-15 87.4 101 53.5
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.5e-15 87.0 159 38.4
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 1.9e-15 86.7 153 37.9
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.2e-15 85.9 118 44.1
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 3.2e-15 85.9 143 42.7
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 5.5e-15 85.1 153 39.9
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 9.4e-15 84.3 154 37.7
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-14 84.0 101 51.5
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.6e-14 83.6 115 43.5
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-14 83.6 101 52.5
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 2.1e-14 83.2 120 42.5
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 2.1e-14 83.2 101 52.5
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 2.7e-14 82.8 106 42.5
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 2.7e-14 82.8 160 42.5
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.6e-14 82.4 153 37.3
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.6e-14 82.4 115 43.5
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 3.6e-14 82.4 101 51.5
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 8.0e-14 81.3 160 39.4
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 8.0e-14 81.3 156 34.6
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 8.0e-14 81.3 113 42.5
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-13 80.1 107 48.6
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.3e-13 79.7 119 40.3
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-13 79.7 101 50.5
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-13 79.7 101 50.5
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.0e-13 79.3 154 37.0
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 4.0e-13 79.0 114 43.9
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.7e-13 78.2 168 37.5
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 8.8e-13 77.8 151 40.4
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 1.2e-12 77.4 136 39.7
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-12 77.4 101 49.5
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.5e-12 77.0 155 38.7
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 2.0e-12 76.6 120 45.8
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.6e-12 76.3 139 42.4
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.6e-12 76.3 169 33.1
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 4.4e-12 75.5 124 41.1
BcaB04g18929 Brassica carinata HOM05D021100 ORTHO05D021772 7.5e-12 74.7 127 44.1
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.7e-11 73.6 152 34.2
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 2.2e-11 73.2 144 38.2
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 2.2e-11 73.2 112 43.8
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-10 70.9 115 44.3
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-10 70.5 87 50.6
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-10 70.1 168 34.5
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-10 70.1 168 34.5
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 3.1e-10 69.3 104 44.2
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 5.3e-10 68.6 103 43.7
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 7.0e-10 68.2 100 40.0
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 9.1e-10 67.8 93 46.2
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.2e-09 67.4 194 33.5
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 2.0e-09 66.6 93 45.2
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 2.0e-09 66.6 93 45.2
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.0e-09 66.6 112 39.3
BraA03t13172Z Brassica rapa HOM05D021100 ORTHO05D021772 4.5e-09 65.5 114 43.9
C03p48620 Brassica napus HOM05D021100 ORTHO05D021772 5.9e-09 65.1 114 44.7
BolC3t17141H Brassica oleracea HOM05D021100 ORTHO05D021772 7.7e-09 64.7 100 48.0
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 1.0e-08 64.3 115 35.7
BraA03t13170Z Brassica rapa HOM05D021100 ORTHO05D021772 2.9e-08 62.8 113 44.2
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 2.9e-08 62.8 125 41.6
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 2.9e-08 62.8 99 39.4
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 2.9e-08 62.8 99 44.4
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.0e-08 62.0 120 37.5
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 6.5e-08 61.6 115 35.7
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-07 60.8 193 29.5
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.9e-07 60.1 113 40.7
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.2e-07 58.2 190 30.0
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 1.6e-06 57.0 126 36.5
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.1e-06 56.6 103 41.7
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.6e-06 55.8 155 32.3


User provided reference genes

Program Settings