Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR091170 Cardamine hirsuta HOM05D008709 ORTHO05D011440 6.4e-85 317.4 162 100.0
CARHR091180 Cardamine hirsuta HOM05D008709 ORTHO05D011440 7.4e-49 197.6 168 63.7
AT2G16005 Arabidopsis thaliana HOM05D008709 ORTHO05D011440 8.8e-34 147.5 163 53.4
C03p92330 Brassica napus HOM05D008709 ORTHO05D011440 3.2e-28 129.0 159 49.7
BolC3t21545H Brassica oleracea HOM05D008709 ORTHO05D011440 5.5e-28 128.3 159 49.1
BcaC01g01470 Brassica carinata HOM05D008709 ORTHO05D011440 2.1e-27 126.3 147 51.0
CARHR091160 Cardamine hirsuta HOM05D008709 ORTHO05D011440 8.0e-27 124.4 151 50.3
CARHR091150 Cardamine hirsuta HOM05D008709 ORTHO05D011440 1.4e-26 123.6 135 50.4
BolC3t17089H Brassica oleracea HOM05D008709 ORTHO05D011440 2.2e-21 106.3 148 45.9
BraA03t13118Z Brassica rapa HOM05D008709 ORTHO05D011440 6.5e-21 104.8 152 44.7
BcaB04g18876 Brassica carinata HOM05D008709 ORTHO05D011440 5.5e-20 101.7 121 48.8
BcaC01g03840 Brassica carinata HOM05D008709 ORTHO05D021804 2.7e-19 99.4 153 46.4
BcaC01g03838 Brassica carinata HOM05D008709 ORTHO05D011440 4.7e-19 98.6 122 50.0
C03p48080 Brassica napus HOM05D008709 ORTHO05D011440 4.7e-19 98.6 122 50.0
BcaC01g03839 Brassica carinata HOM05D008709 ORTHO05D011440 6.8e-18 94.7 121 47.9
BcaB04g18887 Brassica carinata HOM05D008709 ORTHO05D011440 3.4e-17 92.4 171 42.1
BcaB04g18875 Brassica carinata HOM05D008709 ORTHO05D021804 5.7e-17 91.7 153 43.8
C03p48130 Brassica napus HOM05D008709 ORTHO05D011440 9.8e-17 90.9 167 37.7
BolC3t17093H Brassica oleracea HOM05D008709 ORTHO05D011440 9.8e-17 90.9 167 37.7
A01p38070 Brassica napus HOM05D008709 ORTHO05D024458 1.7e-16 90.1 132 47.7
BraA01t03864Z Brassica rapa HOM05D008709 ORTHO05D024458 3.7e-16 89.0 162 42.6
BraA03t13114Z Brassica rapa HOM05D008709 ORTHO05D011440 3.7e-16 89.0 151 41.7
C01p48280 Brassica napus HOM05D008709 ORTHO05D024458 8.3e-16 87.8 161 44.1
BcaC09g48582 Brassica carinata HOM05D008709 ORTHO05D024458 4.1e-15 85.5 163 43.6
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 7.0e-15 84.7 122 42.6
AT3G44100 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 1.2e-14 84.0 149 43.0
BolC1t04791H Brassica oleracea HOM05D008709 ORTHO05D024458 1.2e-14 84.0 161 43.5
A06p22210 Brassica napus HOM05D002139 ORTHO05D002264 2.0e-14 83.2 156 38.5
AL5G22100 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 2.7e-14 82.8 149 41.6
BcaB01g01201 Brassica carinata HOM05D002139 ORTHO05D002264 3.5e-14 82.4 149 39.6
BraA06t25309Z Brassica rapa HOM05D002139 ORTHO05D002264 4.5e-14 82.0 156 37.8
Carub.0005s0985 Capsella rubella HOM05D002139 ORTHO05D002264 7.7e-14 81.3 149 40.3
Sp5g17230 Schrenkiella parvula HOM05D002139 ORTHO05D002264 7.7e-14 81.3 156 37.8
BcaC01g02081 Brassica carinata HOM05D002139 ORTHO05D002264 1.7e-13 80.1 149 38.9
C03p68780 Brassica napus HOM05D002139 ORTHO05D002264 1.7e-13 80.1 149 38.9
BolC3t19132H Brassica oleracea HOM05D002139 ORTHO05D002264 1.7e-13 80.1 149 38.9
BraA09t38151Z Brassica rapa HOM05D014281 ORTHO05D027372 1.1e-12 77.4 163 38.0
C01p25000 Brassica napus HOM05D014281 ORTHO05D027372 1.9e-12 76.6 153 37.3
BolC1t02444H Brassica oleracea HOM05D014281 ORTHO05D027372 1.9e-12 76.6 153 37.3
BraA03t13112Z Brassica rapa HOM05D008709 ORTHO05D011440 1.9e-12 76.6 157 36.9
Thhalv10010794m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 2.5e-12 76.3 156 35.9
C03p48060 Brassica napus HOM05D008709 ORTHO05D021804 3.2e-12 75.9 116 42.2
BolC3t17087H Brassica oleracea HOM05D008709 ORTHO05D021804 3.2e-12 75.9 116 42.2
CARHR152880 Cardamine hirsuta HOM05D002139 ORTHO05D002264 4.2e-12 75.5 150 37.3
A03p39650 Brassica napus HOM05D008709 ORTHO05D011440 5.5e-12 75.1 159 36.5
Potri.006G201400 Populus trichocarpa HOM05D002139 ORTHO05D002264 5.5e-12 75.1 161 31.7
THA.LOC104810941 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 5.5e-12 75.1 149 36.2
BcaC01g03841 Brassica carinata HOM05D008709 ORTHO05D011440 7.2e-12 74.7 133 37.6
A03p39680 Brassica napus HOM05D008709 ORTHO05D021804 1.2e-11 73.9 116 41.4
Thhalv10009560m.g Eutrema salsugineum HOM05D008709 ORTHO05D011440 1.2e-11 73.9 84 47.6
BraA03t13116Z Brassica rapa HOM05D008709 ORTHO05D021804 2.7e-11 72.8 116 41.4
A03p39670 Brassica napus HOM05D008709 ORTHO05D011440 2.3e-10 69.7 85 43.5
BcaB04g18877 Brassica carinata HOM05D008709 ORTHO05D011440 8.8e-10 67.8 87 46.0
CARHR102450 Cardamine hirsuta HOM05D008709 ORTHO05D011440 8.8e-10 67.8 72 56.9
Sed0012069 Sechium edule HOM05D002139 ORTHO05D002264 2.6e-09 66.2 141 31.9
A08p19780 Brassica napus HOM05D014281 ORTHO05D040471 1.3e-08 63.9 167 34.1
A03p39690 Brassica napus HOM05D008709 ORTHO05D011440 1.7e-08 63.5 93 45.2
BraA03t13117Z Brassica rapa HOM05D008709 ORTHO05D011440 2.2e-08 63.2 93 46.2
A09p17660 Brassica napus HOM05D013697 ORTHO05D015934 3.7e-08 62.4 145 31.0
C03p48140 Brassica napus HOM05D008709 ORTHO05D011440 4.9e-08 62.0 84 53.6
C09p22000 Brassica napus HOM05D013697 ORTHO05D015934 6.3e-08 61.6 145 31.0
BolC9t55104H Brassica oleracea HOM05D013697 ORTHO05D015934 6.3e-08 61.6 145 31.0
BolC3t17085H Brassica oleracea HOM05D008709 ORTHO05D011440 8.3e-08 61.2 123 37.4
CsaV3_1G044000 Cucumis sativus L. HOM05D002139 ORTHO05D002264 8.3e-08 61.2 142 30.3
MD14G1041700 Malus domestica HOM05D002139 ORTHO05D002264 8.3e-08 61.2 146 32.2
Sabra16G0068800 Salix brachista HOM05D002139 ORTHO05D002264 8.3e-08 61.2 148 31.1
Potri.016G067800 Populus trichocarpa HOM05D002139 ORTHO05D002264 1.1e-07 60.8 151 30.5
BcaB04g18885 Brassica carinata HOM05D008709 ORTHO05D011440 1.4e-07 60.5 84 38.1
BraA09t37395Z Brassica rapa HOM05D013697 ORTHO05D015934 1.4e-07 60.5 148 31.1
BcaC06g31532 Brassica carinata HOM05D023624 ORTHO05D032369 3.1e-07 59.3 122 37.7
AT1G45015 Arabidopsis thaliana HOM05D009123 ORTHO05D019748 5.4e-07 58.5 164 30.5
C09p22010 Brassica napus HOM05D013697 ORTHO05D015934 5.4e-07 58.5 155 29.7
BolC9t55105H Brassica oleracea HOM05D013697 ORTHO05D015934 5.4e-07 58.5 155 29.7
TAR369G0016 Trochodendron aralioides HOM05D002139 ORTHO05D002264 5.4e-07 58.5 139 29.5
BcaB03g12595 Brassica carinata HOM05D014281 ORTHO05D027372 1.2e-06 57.4 120 33.3
PGR142G1998 Punica granatum HOM05D002139 ORTHO05D002264 1.2e-06 57.4 143 30.1
Sabra06G0155100 Salix brachista HOM05D002139 ORTHO05D002264 1.2e-06 57.4 89 36.0
MELO3C009994.2 Cucumis melo HOM05D002139 ORTHO05D002264 2.7e-06 56.2 104 32.7
Aa31LG4G13660 Aethionema arabicum HOM05D002139 ORTHO05D002264 3.5e-06 55.8 204 27.9
Dinv31779 Davidia involucrata HOM05D002139 ORTHO05D002264 3.5e-06 55.8 151 31.1
arahy.Tifrunner.gnm1.ann1.FYG8ST Arachis hypogaea HOM05D002139 ORTHO05D002264 4.5e-06 55.5 154 33.1
Dinv12355 Davidia involucrata HOM05D002139 ORTHO05D002264 4.5e-06 55.5 145 31.7
Dinv18855 Davidia involucrata HOM05D002139 ORTHO05D002264 4.5e-06 55.5 149 28.9
Oeu045012.1 Olea europaea HOM05D002139 ORTHO05D002264 4.5e-06 55.5 155 27.7
Actinidia24264 Actinidia chinensis HOM05D002139 ORTHO05D002264 5.9e-06 55.1 156 26.9
PGR004G2773 Punica granatum HOM05D002139 ORTHO05D002264 7.7e-06 54.7 147 27.2


User provided reference genes

Program Settings