Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR091160 Cardamine hirsuta HOM05D008709 ORTHO05D011440 1.2e-86 323.2 161 100.0
AT2G16005 Arabidopsis thaliana HOM05D008709 ORTHO05D011440 3.7e-48 195.3 147 67.3
C03p92330 Brassica napus HOM05D008709 ORTHO05D011440 3.9e-34 148.7 147 59.2
BolC3t21545H Brassica oleracea HOM05D008709 ORTHO05D011440 5.1e-34 148.3 147 59.2
BcaC01g01470 Brassica carinata HOM05D008709 ORTHO05D011440 1.5e-33 146.7 138 60.1
CARHR091180 Cardamine hirsuta HOM05D008709 ORTHO05D011440 5.0e-29 131.7 155 49.7
BolC3t17089H Brassica oleracea HOM05D008709 ORTHO05D011440 6.1e-27 124.8 156 51.9
CARHR091170 Cardamine hirsuta HOM05D008709 ORTHO05D011440 1.8e-26 123.2 151 50.3
BraA03t13118Z Brassica rapa HOM05D008709 ORTHO05D011440 3.3e-25 119.0 156 50.0
BcaC01g03838 Brassica carinata HOM05D008709 ORTHO05D011440 1.5e-22 110.2 117 56.4
C03p48080 Brassica napus HOM05D008709 ORTHO05D011440 1.5e-22 110.2 117 56.4
CARHR091150 Cardamine hirsuta HOM05D008709 ORTHO05D011440 1.9e-20 103.2 135 45.9
BcaB04g18887 Brassica carinata HOM05D008709 ORTHO05D011440 4.2e-20 102.1 162 44.4
C03p48130 Brassica napus HOM05D008709 ORTHO05D011440 4.2e-20 102.1 150 45.3
BolC3t17093H Brassica oleracea HOM05D008709 ORTHO05D011440 4.2e-20 102.1 150 45.3
Thhalv10009560m.g Eutrema salsugineum HOM05D008709 ORTHO05D011440 5.5e-20 101.7 130 48.5
BcaB04g18877 Brassica carinata HOM05D008709 ORTHO05D011440 4.7e-19 98.6 84 64.3
BcaC09g48582 Brassica carinata HOM05D008709 ORTHO05D024458 3.0e-18 95.9 146 45.9
BcaB04g18876 Brassica carinata HOM05D008709 ORTHO05D011440 5.1e-18 95.1 107 53.3
C01p48280 Brassica napus HOM05D008709 ORTHO05D024458 1.5e-17 93.6 145 44.8
BraA03t13114Z Brassica rapa HOM05D008709 ORTHO05D011440 2.6e-17 92.8 142 40.1
A01p38070 Brassica napus HOM05D008709 ORTHO05D024458 3.3e-17 92.4 114 50.0
BraA01t03864Z Brassica rapa HOM05D008709 ORTHO05D024458 4.4e-17 92.0 149 41.6
BolC1t04791H Brassica oleracea HOM05D008709 ORTHO05D024458 7.4e-17 91.3 145 44.8
BcaC01g03839 Brassica carinata HOM05D008709 ORTHO05D011440 2.2e-16 89.7 107 52.3
BcaC01g03840 Brassica carinata HOM05D008709 ORTHO05D021804 2.2e-16 89.7 153 41.8
BcaB04g18875 Brassica carinata HOM05D008709 ORTHO05D021804 2.8e-16 89.4 147 42.9
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.4e-15 87.0 117 46.2
BraA03t13112Z Brassica rapa HOM05D008709 ORTHO05D011440 1.8e-15 86.7 155 36.8
A03p39670 Brassica napus HOM05D008709 ORTHO05D011440 6.9e-15 84.7 91 41.8
BcaC01g03841 Brassica carinata HOM05D008709 ORTHO05D011440 4.5e-14 82.0 133 36.8
A03p39650 Brassica napus HOM05D008709 ORTHO05D011440 4.5e-14 82.0 157 35.7
C03p48060 Brassica napus HOM05D008709 ORTHO05D021804 1.0e-13 80.9 128 41.4
BolC3t17087H Brassica oleracea HOM05D008709 ORTHO05D021804 1.0e-13 80.9 128 41.4
A03p39680 Brassica napus HOM05D008709 ORTHO05D021804 2.2e-13 79.7 128 41.4
BraA03t13116Z Brassica rapa HOM05D008709 ORTHO05D021804 8.5e-13 77.8 128 40.6
CsaV3_1G044000 Cucumis sativus L. HOM05D002139 ORTHO05D002264 3.2e-12 75.9 143 35.7
Sed0012069 Sechium edule HOM05D002139 ORTHO05D002264 3.2e-12 75.9 136 36.0
AT3G44100 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 5.5e-12 75.1 137 39.4
Thhalv10010794m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 5.5e-12 75.1 145 35.2
BraA06t25309Z Brassica rapa HOM05D002139 ORTHO05D002264 1.2e-11 73.9 147 36.7
BcaB01g01201 Brassica carinata HOM05D002139 ORTHO05D002264 2.1e-11 73.2 137 38.0
Gohir.D05G080300 Gossypium hirsutum HOM05D002139 ORTHO05D002264 2.1e-11 73.2 148 35.1
Gorai.009G082000 Gossypium raimondii HOM05D002139 ORTHO05D002264 2.1e-11 73.2 148 35.1
Potri.006G201400 Populus trichocarpa HOM05D002139 ORTHO05D002264 2.7e-11 72.8 148 37.2
BcaC01g02081 Brassica carinata HOM05D002139 ORTHO05D002264 3.6e-11 72.4 142 34.5
C03p68780 Brassica napus HOM05D002139 ORTHO05D002264 3.6e-11 72.4 142 34.5
BolC3t19132H Brassica oleracea HOM05D002139 ORTHO05D002264 3.6e-11 72.4 142 34.5
A06p22210 Brassica napus HOM05D002139 ORTHO05D002264 4.7e-11 72.0 142 34.5
Carub.0005s0985 Capsella rubella HOM05D002139 ORTHO05D002264 4.7e-11 72.0 145 35.2
AL5G22100 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 6.1e-11 71.6 138 39.1
Gorai.001G126400 Gossypium raimondii HOM05D002139 ORTHO05D002264 6.1e-11 71.6 146 33.6
BcaB04g18885 Brassica carinata HOM05D008709 ORTHO05D011440 8.0e-11 71.2 84 47.6
Gohir.A07G113800 Gossypium hirsutum HOM05D002139 ORTHO05D002264 2.3e-10 69.7 143 32.9
Gohir.D07G117500 Gossypium hirsutum HOM05D002139 ORTHO05D002264 2.3e-10 69.7 146 32.9
CARHR152880 Cardamine hirsuta HOM05D002139 ORTHO05D002264 3.0e-10 69.3 137 35.8
MELO3C009994.2 Cucumis melo HOM05D002139 ORTHO05D002264 3.9e-10 68.9 110 38.2
Duzib170G0994 Durio zibethinus HOM05D002139 ORTHO05D002264 8.8e-10 67.8 146 34.2
BcaB04g18874 Brassica carinata HOM05D008709 ORTHO05D011440 1.1e-09 67.4 139 35.3
Gohir.A05G077500 Gossypium hirsutum HOM05D002139 ORTHO05D002264 1.5e-09 67.0 148 33.1
Sc07g0006390 Simmondsia chinensis HOM05D002139 ORTHO05D002264 1.5e-09 67.0 158 32.9
Sp5g17230 Schrenkiella parvula HOM05D002139 ORTHO05D002264 2.0e-09 66.6 146 34.9
THA.LOC104810941 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 2.6e-09 66.2 146 34.9
Oeu045012.1 Olea europaea HOM05D002139 ORTHO05D002264 3.3e-09 65.9 144 31.9
BolC3t17085H Brassica oleracea HOM05D008709 ORTHO05D011440 4.4e-09 65.5 116 37.1
Eucgr.J00584 Eucalyptus grandis HOM05D002139 ORTHO05D002264 4.4e-09 65.5 146 33.6
Dinv18855 Davidia involucrata HOM05D002139 ORTHO05D002264 7.4e-09 64.7 156 34.0
Thecc.05G107700 Theobroma cacao HOM05D002139 ORTHO05D002264 2.2e-08 63.2 156 33.3
Duzib106G1445 Durio zibethinus HOM05D002139 ORTHO05D002264 2.8e-08 62.8 139 30.9
TAR369G0016 Trochodendron aralioides HOM05D002139 ORTHO05D002264 2.8e-08 62.8 145 29.7
COL.COLO4_25392 Corchorus olitorius HOM05D002139 ORTHO05D002264 3.7e-08 62.4 150 31.3
VMungo0720G0286 Vigna mungo HOM05D002139 ORTHO05D002264 3.7e-08 62.4 156 29.5
Gohir.A04G055400 Gossypium hirsutum HOM05D002139 ORTHO05D002264 4.8e-08 62.0 140 30.7
TWI74G1382 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 4.8e-08 62.0 156 31.4
Os07g0159800 Oryza sativa ssp. japonica HOM05D002139 ORTHO05D002264 8.2e-08 61.2 135 33.3
Os03g0788200 Oryza sativa ssp. japonica HOM05D002139 ORTHO05D002264 1.1e-07 60.8 148 33.8
A09p17660 Brassica napus HOM05D013697 ORTHO05D015934 1.4e-07 60.5 133 33.8
Ciclev10013007m.g Citrus clementina HOM05D002139 ORTHO05D002264 1.4e-07 60.5 134 32.8
Gohir.D04G092600 Gossypium hirsutum HOM05D002139 ORTHO05D002264 1.4e-07 60.5 140 30.0
PGR119G2506 Punica granatum HOM05D002139 ORTHO05D002264 1.4e-07 60.5 141 33.3
TWI79G1050 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 1.4e-07 60.5 147 30.6
A03p39690 Brassica napus HOM05D008709 ORTHO05D011440 1.8e-07 60.1 77 46.8
C09p22000 Brassica napus HOM05D013697 ORTHO05D015934 1.8e-07 60.1 133 33.8
BolC9t55104H Brassica oleracea HOM05D013697 ORTHO05D015934 1.8e-07 60.1 133 33.8
CARHR102450 Cardamine hirsuta HOM05D008709 ORTHO05D011440 1.8e-07 60.1 65 50.8
RcHm_v2.0_Chr5g0049041 Rosa chinensis HOM05D002139 ORTHO05D002264 1.8e-07 60.1 128 33.6
BraA09t37395Z Brassica rapa HOM05D013697 ORTHO05D015934 2.4e-07 59.7 133 33.1
Gorai.009G394500 Gossypium raimondii HOM05D002139 ORTHO05D002264 3.1e-07 59.3 140 30.0
Phvul.011G100100 Phaseolus vulgaris HOM05D002139 ORTHO05D002264 3.1e-07 59.3 145 35.9
Manes.11G103750 Manihot esculenta HOM05D002139 ORTHO05D002264 4.1e-07 58.9 137 31.4
PGR004G2773 Punica granatum HOM05D002139 ORTHO05D002264 4.1e-07 58.9 147 32.0
Sabra16G0068800 Salix brachista HOM05D002139 ORTHO05D002264 4.1e-07 58.9 148 33.8
Sc24g0002480 Simmondsia chinensis HOM05D002139 ORTHO05D002264 4.1e-07 58.9 150 26.0
Thecc.09G270000 Theobroma cacao HOM05D002139 ORTHO05D002264 4.1e-07 58.9 143 30.8
BraA03t13117Z Brassica rapa HOM05D008709 ORTHO05D011440 5.3e-07 58.5 77 46.8
MBI11_g04609_MAGBIO Magnolia biondii HOM05D002139 ORTHO05D002264 5.3e-07 58.5 148 29.1
CANSAT54G2328 Cannabis sativa HOM05D002139 ORTHO05D002264 7.0e-07 58.2 139 32.4
Lalb_Chr19g0136171 Lupinus albus HOM05D002139 ORTHO05D002264 7.0e-07 58.2 155 31.6
Oeu020192.1 Olea europaea HOM05D002139 ORTHO05D002264 7.0e-07 58.2 144 29.9
Psat6g126240 Pisum sativum HOM05D002139 ORTHO05D002264 7.0e-07 58.2 150 29.3
TWI53G0030 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 7.0e-07 58.2 144 32.6
BraA03t12888Z Brassica rapa HOM05D002139 ORTHO05D002264 9.1e-07 57.8 139 31.7
CARHR086340 Cardamine hirsuta HOM05D002139 ORTHO05D002264 9.1e-07 57.8 156 29.5
QL07p027306 Quercus lobata HOM05D002139 ORTHO05D002264 9.1e-07 57.8 143 30.1
AUR62030707 Chenopodium quinoa HOM05D002139 ORTHO05D002264 1.2e-06 57.4 150 32.7
Duzib093G2229 Durio zibethinus HOM05D002139 ORTHO05D002264 1.2e-06 57.4 156 30.1
Eucgr.K01917 Eucalyptus grandis HOM05D002139 ORTHO05D002264 1.2e-06 57.4 139 30.9
Gohir.D07G183700 Gossypium hirsutum HOM05D002139 ORTHO05D002264 1.2e-06 57.4 121 33.1
Gohir.D07G195900 Gossypium hirsutum HOM05D002139 ORTHO05D002264 1.2e-06 57.4 121 33.1
VMungo1127G0559 Vigna mungo HOM05D002139 ORTHO05D002264 1.2e-06 57.4 154 33.1
Zm00001eb060070 Zea mays HOM05D002139 ORTHO05D002264 1.2e-06 57.4 110 40.0
Atru.chr3.3084 Acer truncatum HOM05D002139 ORTHO05D002264 2.0e-06 56.6 148 31.1
MSTRG.19337 Avicennia marina HOM05D002139 ORTHO05D002264 2.0e-06 56.6 140 31.4
Migut.J00746 Erythranthe guttata HOM05D002139 ORTHO05D002264 2.0e-06 56.6 143 29.4
Potri.016G067800 Populus trichocarpa HOM05D002139 ORTHO05D002264 2.0e-06 56.6 149 34.2
Aa31LG4G13660 Aethionema arabicum HOM05D002139 ORTHO05D002264 2.6e-06 56.2 116 37.9
ATR0697G252 Amborella trichopoda HOM05D002139 ORTHO05D002264 2.6e-06 56.2 156 26.3
AagrBONN_evm.TU.Sc2ySwM_117.1802 Anthoceros agrestis HOM05D002139 ORTHO05D002264 2.6e-06 56.2 107 29.9
Duzib168G0322 Durio zibethinus HOM05D002139 ORTHO05D002264 2.6e-06 56.2 116 32.8
Nn2g14365 Nelumbo nucifera HOM05D002139 ORTHO05D002264 2.6e-06 56.2 139 30.2
Phvul.005G117800 Phaseolus vulgaris HOM05D002139 ORTHO05D002264 2.6e-06 56.2 154 33.1
TPR.G9689 Trifolium pratense HOM05D002139 ORTHO05D002264 2.6e-06 56.2 142 28.9
Cc06_g06770 Coffea canephora HOM05D002139 ORTHO05D002264 3.5e-06 55.8 142 28.9
Eucgr.A02564 Eucalyptus grandis HOM05D002139 ORTHO05D002264 3.5e-06 55.8 129 33.3
Glyma.12G095800 Glycine max HOM05D002139 ORTHO05D002264 3.5e-06 55.8 145 33.1
Gohir.D13G108950 Gossypium hirsutum HOM05D002139 ORTHO05D002264 3.5e-06 55.8 121 31.4
Sabra06G0155100 Salix brachista HOM05D002139 ORTHO05D002264 3.5e-06 55.8 97 39.2
Cpa.g.sc1467.2 Carica papaya HOM05D002139 ORTHO05D002264 4.5e-06 55.5 136 28.7
CiPaw.13G120500 Carya illinoinensis HOM05D002139 ORTHO05D002264 4.5e-06 55.5 141 32.6
Thhalv10021698m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 4.5e-06 55.5 160 30.0
Gorai.010G079000 Gossypium raimondii HOM05D002139 ORTHO05D002264 4.5e-06 55.5 121 32.2
Lj1A437T6 Lonicera japonica HOM05D002139 ORTHO05D002264 4.5e-06 55.5 113 35.4
Lj1C435G7 Lonicera japonica HOM05D002139 ORTHO05D002264 4.5e-06 55.5 113 35.4
Lj5g0006018 Lotus japonicus HOM05D002139 ORTHO05D002264 4.5e-06 55.5 111 36.0
Prupe.7G092100 Prunus persica HOM05D002139 ORTHO05D002264 4.5e-06 55.5 131 32.1
PGR142G1998 Punica granatum HOM05D002139 ORTHO05D002264 4.5e-06 55.5 139 30.9
C03p48140 Brassica napus HOM05D008709 ORTHO05D011440 5.9e-06 55.1 76 47.4
ECA248G1450 Erigeron canadensis HOM05D002139 ORTHO05D002264 5.9e-06 55.1 143 29.4
THA.LOC104816636 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 5.9e-06 55.1 147 31.3
A03p37280 Brassica napus HOM05D002139 ORTHO05D002264 7.7e-06 54.7 139 31.7
BolC3t16778H Brassica oleracea HOM05D002139 ORTHO05D002264 7.7e-06 54.7 139 30.2
CDE04G2829 Ceratophyllum demersum HOM05D002139 ORTHO05D002264 7.7e-06 54.7 137 27.7
Ca_11675_v3 Cicer arietinum L. HOM05D002139 ORTHO05D002264 7.7e-06 54.7 155 30.3
Dinv12355 Davidia involucrata HOM05D002139 ORTHO05D002264 7.7e-06 54.7 145 31.7
Hma1.2p1_0064F.1_g034550 Hydrangea macrophylla HOM05D002139 ORTHO05D002264 7.7e-06 54.7 111 39.6
Lj2A952G13 Lonicera japonica HOM05D002139 ORTHO05D002264 7.7e-06 54.7 119 33.6
Nn6g34623 Nelumbo nucifera HOM05D002139 ORTHO05D002264 7.7e-06 54.7 142 30.3
Zm00001eb117430 Zea mays HOM05D002139 ORTHO05D002264 7.7e-06 54.7 144 34.7


User provided reference genes

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