Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 7.9e-32 140.2 70 100.0
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 2.7e-16 88.6 46 93.5
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 1.4e-15 86.3 46 93.5
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 3.0e-15 85.1 46 91.3
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 3.9e-15 84.7 46 89.1
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 5.1e-15 84.3 46 89.1
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 2.2e-13 79.0 46 82.6
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 2.2e-13 79.0 46 82.6
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 2.8e-13 78.6 46 82.6
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 2.8e-13 78.6 46 82.6
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 2.8e-13 78.6 46 82.6
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 1.4e-12 76.3 46 80.4
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 4.1e-12 74.7 46 78.3
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 5.3e-12 74.3 46 73.9
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 9.1e-12 73.6 46 71.7
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 9.1e-12 73.6 54 66.7
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 1.5e-11 72.8 65 49.2
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 2.0e-11 72.4 46 69.6
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 2.6e-11 72.0 46 65.2
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 2.6e-11 72.0 63 60.3
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 5.9e-11 70.9 46 67.4
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 5.9e-11 70.9 64 56.2
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 5.9e-11 70.9 46 67.4
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 7.7e-11 70.5 65 53.8
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 1.3e-10 69.7 46 67.4
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 1.3e-10 69.7 46 67.4
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 1.3e-10 69.7 46 67.4
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 2.2e-10 68.9 65 56.9
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 2.2e-10 68.9 46 67.4
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 2.9e-10 68.6 45 68.9
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 3.8e-10 68.2 46 63.0
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 3.8e-10 68.2 46 65.2
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 3.8e-10 68.2 46 63.0
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 6.5e-10 67.4 46 63.0
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 8.5e-10 67.0 46 67.4
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 8.5e-10 67.0 46 65.2
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 1.1e-09 66.6 46 65.2
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 1.1e-09 66.6 46 63.0
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 1.1e-09 66.6 53 56.6
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 1.4e-09 66.2 64 50.0
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 1.4e-09 66.2 46 63.0
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 1.4e-09 66.2 46 65.2
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 1.9e-09 65.9 45 66.7
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 1.9e-09 65.9 46 65.2
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 2.5e-09 65.5 45 66.7
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 2.5e-09 65.5 50 60.0
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 2.5e-09 65.5 45 66.7
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 4.2e-09 64.7 46 63.0
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 5.5e-09 64.3 45 66.7
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 5.5e-09 64.3 48 58.3
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 5.5e-09 64.3 46 60.9
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 5.5e-09 64.3 48 58.3
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 5.5e-09 64.3 46 63.0
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 7.2e-09 63.9 46 56.5
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 7.2e-09 63.9 46 63.0
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 7.2e-09 63.9 46 63.0
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 9.4e-09 63.5 45 62.2
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 9.4e-09 63.5 46 60.9
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 1.2e-08 63.2 64 50.0
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 1.6e-08 62.8 46 54.3
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 1.6e-08 62.8 48 56.2
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 1.6e-08 62.8 48 56.2
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 1.6e-08 62.8 45 62.2
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 2.1e-08 62.4 64 46.9
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 2.7e-08 62.0 44 63.6
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 2.7e-08 62.0 46 58.7
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 3.6e-08 61.6 46 58.7
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 4.7e-08 61.2 45 60.0
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 6.1e-08 60.8 46 65.2
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 6.1e-08 60.8 46 65.2
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 6.1e-08 60.8 46 58.7
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 7.9e-08 60.5 46 60.9
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 1.0e-07 60.1 46 63.0
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 1.0e-07 60.1 46 63.0
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 1.8e-07 59.3 46 60.9
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 3.0e-07 58.5 46 54.3
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 3.9e-07 58.2 45 57.8
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 5.1e-07 57.8 46 50.0
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 5.1e-07 57.8 45 55.6
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 5.1e-07 57.8 45 55.6
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 5.1e-07 57.8 45 55.6
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 5.1e-07 57.8 45 55.6
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 5.1e-07 57.8 53 54.7
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 6.7e-07 57.4 45 57.8
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 6.7e-07 57.4 45 55.6
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 6.7e-07 57.4 46 58.7
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 1.1e-06 56.6 47 53.2
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 1.5e-06 56.2 46 58.7
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 1.5e-06 56.2 53 52.8
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 1.5e-06 56.2 46 52.2
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 2.6e-06 55.5 45 53.3
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 3.3e-06 55.1 54 50.0
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 4.4e-06 54.7 46 56.5
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 9.7e-06 53.5 45 51.1


User provided reference genes

Program Settings