Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.5e-167 592.0 295 100.0
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.1e-135 486.9 301 85.7
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 7.2e-135 484.2 305 84.9
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.9e-128 462.2 294 82.3
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 5.2e-125 451.4 293 81.2
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.5e-124 449.9 286 82.2
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 3.4e-124 448.7 282 83.7
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 4.8e-123 444.9 286 79.4
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.9e-120 435.6 298 75.8
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 2.9e-120 435.6 286 79.7
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 2.9e-120 435.6 286 79.7
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-119 433.7 287 80.1
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.5e-119 433.3 286 79.4
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 5.5e-119 431.4 287 79.4
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 5.5e-119 431.4 287 79.4
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.2e-118 430.3 287 79.1
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.2e-118 430.3 287 79.1
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.6e-118 429.9 287 79.1
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 3.6e-118 428.7 296 74.3
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 6.1e-118 427.9 292 74.3
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.3e-112 410.2 268 80.2
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 2.3e-112 409.5 302 72.5
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.2e-108 397.1 286 75.2
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 3.4e-108 395.6 286 75.2
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 3.4e-108 395.6 286 75.2
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-107 393.7 286 74.1
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 4.1e-106 388.7 286 73.8
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 2.0e-105 386.3 286 73.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.0e-105 386.3 269 74.0
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 1.7e-104 383.3 293 67.9
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 8.9e-101 370.9 251 74.5
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.5e-100 370.2 265 72.1
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 2.6e-100 369.4 240 76.7
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 3.4e-100 369.0 238 76.5
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 7.5e-100 367.9 272 69.9
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 2.2e-99 366.3 242 76.4
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.9e-99 365.9 238 76.9
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.7e-99 365.5 213 82.6
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 3.7e-99 365.5 236 76.3
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 3.7e-99 365.5 212 83.0
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 6.4e-99 364.8 277 69.7
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.4e-98 363.6 213 82.2
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.2e-98 362.5 211 82.9
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 3.2e-98 362.5 237 75.9
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.6e-97 360.1 220 80.5
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.7e-97 359.4 232 74.6
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.7e-97 359.4 263 71.5
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 3.5e-97 359.0 277 68.6
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 4.6e-97 358.6 215 80.5
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.7e-96 356.7 279 67.0
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 2.3e-96 356.3 235 75.7
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 3.9e-96 355.5 223 78.9
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 1.1e-95 354.0 246 71.1
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.1e-95 354.0 221 77.8
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 1.5e-95 353.6 282 66.3
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.5e-95 353.6 252 71.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.9e-95 353.2 250 71.6
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 4.3e-95 352.1 237 74.3
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 9.5e-95 350.9 234 75.6
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 1.2e-94 350.5 221 77.4
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 1.6e-94 350.1 253 70.4
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 2.8e-94 349.4 221 76.5
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 4.7e-94 348.6 209 80.4
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 6.2e-94 348.2 242 73.6
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 8.1e-94 347.8 228 74.6
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.4e-93 347.1 258 69.4
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.4e-93 347.1 258 69.4
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.4e-93 347.1 278 65.5
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 2.3e-93 346.3 248 71.4
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 2.3e-93 346.3 254 70.9
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 2.3e-93 346.3 220 76.4
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 2.3e-93 346.3 259 68.7
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.1e-93 345.9 242 73.1
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 4.0e-93 345.5 243 70.4
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 5.2e-93 345.1 278 64.7
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 6.8e-93 344.7 253 70.0
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 1.5e-92 343.6 211 79.1
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.0e-92 343.2 227 75.8
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.4e-92 342.4 265 68.7
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 5.8e-92 341.7 242 71.9
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 5.8e-92 341.7 269 69.1
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 9.9e-92 340.9 249 73.1
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 1.7e-91 340.1 224 74.6
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 8.3e-91 337.8 224 73.7
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.1e-90 337.4 237 70.9
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.1e-90 337.4 263 65.0
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.4e-90 337.0 277 63.2
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.9e-90 336.7 241 69.3
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 2.4e-90 336.3 242 70.2
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.4e-90 336.3 275 63.3
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 4.1e-90 335.5 225 73.8
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 5.4e-90 335.1 230 73.0
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 7.1e-90 334.7 275 64.0
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.6e-89 333.6 261 67.4
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 3.5e-89 332.4 227 72.2
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 4.6e-89 332.0 217 73.7
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.0e-88 330.9 215 74.4
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.0e-88 330.9 215 74.4
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.0e-88 330.9 228 71.5
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.3e-88 330.5 262 67.2
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-88 330.5 220 72.7
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.3e-88 330.5 228 71.5
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 3.0e-88 329.3 249 65.9
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 3.9e-88 328.9 215 74.0
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 3.9e-88 328.9 215 74.0
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 3.9e-88 328.9 215 74.0
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 3.9e-88 328.9 257 66.5
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.9e-87 326.6 236 70.3
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 2.5e-87 326.2 219 73.1
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 3.3e-87 325.9 239 69.5
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 3.3e-87 325.9 217 72.4
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.3e-87 325.9 228 70.6
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 8.1e-86 321.2 213 74.6
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-85 320.9 216 76.4
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.1e-85 320.9 211 74.9
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 6.8e-85 318.2 263 62.4
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 3.4e-84 315.8 217 71.9
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 5.8e-84 315.1 265 63.8
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 5.8e-84 315.1 254 63.4
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 5.8e-84 315.1 218 72.5
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 9.9e-84 314.3 231 69.7
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 9.9e-84 314.3 265 62.6
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.3e-83 313.9 210 73.3
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.7e-83 313.5 217 73.3
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 2.2e-83 313.2 212 72.2
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 8.4e-83 311.2 272 60.7
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 1.1e-82 310.8 211 72.0
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.4e-82 310.5 217 72.8
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.4e-82 310.5 227 69.6
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.9e-82 310.1 219 69.9
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.1e-81 306.6 218 69.3
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.9e-79 300.1 175 82.3
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 4.3e-79 298.9 258 59.7
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 7.3e-79 298.1 258 60.1
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.6e-78 297.0 207 71.5
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 1.6e-78 297.0 196 76.0
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 3.6e-78 295.8 226 66.4
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 6.2e-78 295.0 230 65.7
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 7.6e-76 288.1 177 81.4
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.2e-73 280.8 210 69.0
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 7.8e-73 278.1 178 78.7
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.1e-70 270.0 216 64.8
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.5e-65 252.7 215 60.5
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 1.6e-62 243.8 202 59.9
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.1e-61 241.1 218 60.1
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.8e-61 240.4 264 53.8
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 2.4e-61 240.0 215 60.9
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.2e-60 237.7 288 48.3
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.4e-58 230.7 133 85.0
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 2.5e-58 229.9 217 55.8
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 4.2e-58 229.2 133 84.2
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 7.4e-55 218.4 128 83.6
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 7.1e-50 201.8 212 49.1
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 4.6e-49 199.1 217 49.8
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 7.9e-41 171.8 172 52.9
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.8e-40 170.6 161 51.6
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 4.3e-39 166.0 177 54.2
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.2e-27 127.1 78 83.3
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 6.5e-27 125.6 92 64.1
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.1e-18 98.2 65 64.6
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 8.3e-14 82.0 89 44.9
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 2.9e-11 73.6 65 55.4
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 1.1e-10 71.6 75 50.7
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 4.2e-10 69.7 44 72.7
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 4.2e-10 69.7 75 44.0
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.2e-09 68.2 76 55.3
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.5e-07 61.2 40 72.5


User provided reference genes

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