Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 9.6e-59 229.9 116 100.0
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.7e-47 192.6 114 80.7
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 1.2e-45 186.4 117 77.8
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 1.6e-45 186.0 112 81.2
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 3.6e-45 184.9 116 77.6
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 1.0e-44 183.3 117 76.9
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 1.3e-42 176.4 113 77.9
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 4.1e-41 171.4 115 74.8
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 3.4e-40 168.3 117 76.1
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 3.4e-40 168.3 103 87.4
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 4.5e-40 167.9 117 74.4
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 5.9e-40 167.5 107 82.2
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 6.5e-39 164.1 106 82.1
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 2.1e-37 159.1 105 77.1
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 1.8e-36 156.0 111 73.0
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.5e-35 152.9 105 80.0
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 8.0e-29 130.6 77 81.8
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 1.8e-28 129.4 135 54.8
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 3.3e-27 125.2 121 54.5
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.4e-27 124.8 124 54.8
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.7e-27 124.4 124 54.0
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.4e-27 124.0 124 54.0
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.4e-27 124.0 124 54.0
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 7.4e-27 124.0 124 54.0
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 9.7e-27 123.6 125 52.0
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.3e-26 123.2 124 54.0
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-26 122.9 124 54.0
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 2.2e-26 122.5 125 52.0
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 2.2e-26 122.5 126 53.2
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.2e-26 122.5 124 53.2
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.8e-26 122.1 124 54.0
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 4.8e-26 121.3 134 49.3
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.3e-26 120.9 124 53.2
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 6.3e-26 120.9 128 50.0
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 1.8e-25 119.4 123 55.3
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 1.8e-25 119.4 135 49.6
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.8e-25 119.4 113 50.4
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 2.4e-25 119.0 131 48.9
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 3.1e-25 118.6 133 51.1
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 4.1e-25 118.2 123 48.8
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 5.3e-25 117.9 131 48.9
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 9.1e-25 117.1 127 49.6
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 9.1e-25 117.1 113 54.9
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.1e-25 117.1 131 51.1
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.2e-24 116.7 131 48.1
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 1.6e-24 116.3 127 48.0
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.6e-24 116.3 124 53.2
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.6e-24 116.3 118 52.5
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 2.0e-24 115.9 69 75.4
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.5e-24 115.2 112 53.6
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 4.5e-24 114.8 127 49.6
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.9e-24 114.4 124 52.4
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 7.7e-24 114.0 109 56.9
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 1.0e-23 113.6 126 49.2
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 1.0e-23 113.6 109 51.4
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 1.3e-23 113.2 103 54.4
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.3e-23 113.2 124 52.4
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.3e-23 113.2 124 52.4
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.3e-23 113.2 115 52.2
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.7e-23 112.8 115 50.4
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 1.7e-23 112.8 102 56.9
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 2.2e-23 112.5 124 48.4
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 2.2e-23 112.5 119 51.3
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 2.9e-23 112.1 125 48.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 2.9e-23 112.1 124 49.2
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 2.9e-23 112.1 117 50.4
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 3.8e-23 111.7 71 78.9
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 6.5e-23 110.9 114 50.9
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 6.5e-23 110.9 121 50.4
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 8.5e-23 110.5 115 49.6
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 1.5e-22 109.8 110 52.7
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 1.9e-22 109.4 71 77.5
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 2.5e-22 109.0 136 47.8
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 2.5e-22 109.0 115 50.4
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 2.5e-22 109.0 120 49.2
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 3.2e-22 108.6 115 49.6
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 3.2e-22 108.6 123 49.6
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 4.2e-22 108.2 112 51.8
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 7.2e-22 107.5 114 47.4
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 9.4e-22 107.1 123 47.2
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 9.4e-22 107.1 121 47.9
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 9.4e-22 107.1 134 44.8
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 3.6e-21 105.1 137 43.8
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 3.6e-21 105.1 137 43.8
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 3.6e-21 105.1 119 44.5
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 3.6e-21 105.1 119 46.2
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 3.6e-21 105.1 126 46.8
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 3.6e-21 105.1 111 49.5
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 6.1e-21 104.4 110 47.3
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 6.1e-21 104.4 144 43.8
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.0e-20 103.6 130 46.2
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 1.0e-20 103.6 111 46.8
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-20 103.2 101 53.5
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.4e-20 103.2 106 51.9
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 2.3e-20 102.4 116 45.7
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 3.0e-20 102.1 124 47.6
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 1.2e-19 100.1 144 41.0
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.5e-19 99.8 120 44.2
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 3.4e-19 98.6 112 52.7
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 4.4e-19 98.2 106 47.2
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 4.8e-18 94.7 114 43.0
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.4e-17 93.2 123 43.1
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.4e-17 92.4 132 43.2
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.4e-17 92.4 110 49.1
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 5.3e-17 91.3 63 68.3
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 7.0e-17 90.9 94 53.2
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 9.1e-17 90.5 78 55.1
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 1.2e-16 90.1 112 44.6
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.0e-15 84.7 62 66.1
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 5.0e-15 84.7 65 58.5
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 6.5e-15 84.3 112 42.9
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 1.5e-14 83.2 108 39.8
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 3.2e-14 82.0 91 49.5
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 3.2e-14 82.0 108 42.6
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 4.2e-14 81.6 75 53.3
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 7.2e-14 80.9 109 44.0
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 2.1e-13 79.3 110 42.7
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 3.6e-13 78.6 119 41.2
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 6.1e-13 77.8 70 54.3
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 3.0e-12 75.5 86 46.5
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.2e-12 74.7 91 46.2
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 2.0e-11 72.8 85 44.7
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 1.3e-10 70.1 125 35.2
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 1.7e-10 69.7 56 60.7
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 3.7e-10 68.6 83 45.8
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-09 67.0 91 45.1
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 4.1e-09 65.1 56 60.7
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 9.1e-09 63.9 57 57.9
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.2e-08 63.5 57 57.9
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 4.5e-08 61.6 49 55.1
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 6.6e-07 57.8 45 60.0
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 5.5e-06 54.7 68 44.1
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 9.5e-06 53.9 77 40.3


User provided reference genes

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