Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 7.3e-176 620.5 332 100.0
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 1.3e-137 493.4 342 79.5
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 2.4e-134 482.6 343 78.1
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 9.3e-131 470.7 339 79.1
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 1.2e-130 470.3 343 77.3
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 4.6e-130 468.4 343 76.7
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 4.6e-130 468.4 343 76.7
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 4.6e-130 468.4 338 77.2
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 7.9e-130 467.6 346 76.3
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 7.9e-130 467.6 343 76.7
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 1.2e-117 427.2 339 72.3
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 2.0e-117 426.4 341 73.3
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 1.2e-114 417.2 338 71.3
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 7.9e-114 414.5 341 71.8
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 7.2e-107 391.3 307 75.6
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 1.5e-93 347.1 230 83.5
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 1.8e-86 323.6 337 61.7
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 1.3e-76 290.8 234 73.9
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 2.6e-56 223.4 338 49.1
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 6.8e-49 198.7 394 43.9
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 1.5e-48 197.6 389 43.7
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 3.4e-48 196.4 383 42.6
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 7.5e-48 195.3 382 43.2
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 7.8e-45 185.3 388 41.5
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 1.7e-44 184.1 387 41.3
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 6.6e-44 182.2 375 41.1
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 6.6e-44 182.2 375 41.1
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 1.9e-43 180.6 384 42.7
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 4.7e-42 176.0 338 41.1
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 8.1e-42 175.3 375 40.0
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 2.0e-40 170.6 393 40.7
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 2.0e-40 170.6 392 39.8
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 4.4e-40 169.5 390 39.2
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 2.2e-39 167.2 377 39.0
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 8.3e-39 165.2 394 38.8
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 2.4e-38 163.7 394 38.6
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 5.1e-36 156.0 279 47.0
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 1.7e-28 131.0 434 33.6
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 4.0e-25 119.8 353 35.4
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 9.0e-25 118.6 329 36.2
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 5.8e-24 115.9 352 31.0
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 1.9e-22 110.9 344 33.4
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 1.5e-19 101.3 348 33.9
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 1.6e-18 97.8 344 31.4
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 8.1e-18 95.5 341 32.6
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 8.1e-18 95.5 337 32.6
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 8.1e-18 95.5 340 30.3
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 3.1e-17 93.6 345 31.3
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 3.1e-17 93.6 347 30.3
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 5.3e-17 92.8 339 29.2
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 6.9e-17 92.4 359 30.4
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 6.9e-17 92.4 339 29.8
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 1.2e-16 91.7 360 30.8
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 3.4e-16 90.1 346 29.2
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 2.9e-15 87.0 345 30.4
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 3.8e-15 86.7 354 31.6
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 4.9e-15 86.3 345 31.3
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 9.3e-14 82.0 330 28.8
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 2.1e-13 80.9 344 31.7
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 3.5e-13 80.1 338 28.1
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 1.0e-12 78.6 356 30.1
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 1.0e-12 78.6 332 29.8
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 1.3e-12 78.2 346 28.6
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 3.9e-12 76.6 330 30.3
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 5.1e-12 76.3 335 30.7
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 3.3e-11 73.6 139 41.0
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 4.3e-11 73.2 347 27.1
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 5.6e-11 72.8 366 27.9
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 7.4e-11 72.4 334 30.2
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 9.6e-11 72.0 343 26.2
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 9.6e-11 72.0 336 29.5
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 1.6e-10 71.2 338 27.2
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 2.8e-10 70.5 334 28.4
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 2.8e-10 70.5 331 30.2
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 3.7e-10 70.1 327 28.7
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 6.2e-10 69.3 367 26.7
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 8.1e-10 68.9 325 28.3
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 1.8e-09 67.8 200 36.5
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 1.8e-09 67.8 199 33.7
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 9.0e-09 65.5 369 27.9
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 9.0e-09 65.5 356 27.2
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.5e-08 64.7 331 27.8
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 1.5e-08 64.7 335 29.6
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 2.6e-08 63.9 137 37.2
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 5.8e-08 62.8 234 31.2
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 9.9e-08 62.0 325 29.5
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 1.3e-07 61.6 207 30.9
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 1.7e-07 61.2 343 26.2
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.9e-07 60.5 334 29.0
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 3.8e-07 60.1 336 28.3
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 6.4e-07 59.3 334 28.7
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 6.4e-07 59.3 205 31.7
CiPaw.11G166600 Carya illinoinensis HOM05D001501 ORTHO05D001329 1.9e-06 57.8 132 34.8
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 1.9e-06 57.8 338 26.0
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 2.5e-06 57.4 338 28.4


User provided reference genes

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