Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 4.2e-303 1044.3 679 100.0
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 7.5e-228 794.3 699 72.0
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 1.2e-225 786.9 697 71.2
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 8.6e-216 754.2 698 76.6
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 1.4e-202 710.3 697 66.9
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.8e-166 589.7 697 55.7
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 5.0e-163 578.9 696 65.9
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.1e-159 567.8 693 64.8
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 1.4e-157 560.8 695 63.5
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.0e-155 554.7 692 63.4
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.0e-155 554.7 692 63.4
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 4.7e-145 519.2 607 58.5
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 5.5e-130 469.2 414 74.4
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 2.5e-122 443.7 583 54.5
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 4.7e-121 439.5 582 54.1
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 3.0e-120 436.8 582 54.0
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 4.7e-97 359.8 547 49.9
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.1e-96 358.6 806 35.9
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 1.5e-87 328.2 758 39.3
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 1.7e-86 324.7 789 38.8
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 2.2e-86 324.3 789 35.6
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 6.4e-86 322.8 745 38.8
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.5e-82 311.6 771 38.8
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.5e-82 311.6 748 38.2
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.5e-82 310.8 779 35.8
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.6e-81 308.1 746 39.9
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.6e-81 307.0 778 38.0
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.8e-80 304.7 773 36.7
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 4.0e-80 303.5 758 37.2
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 3.4e-79 300.4 782 37.1
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.3e-78 298.5 800 37.8
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.7e-78 298.1 757 37.1
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.9e-78 297.4 747 35.7
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 6.4e-78 296.2 770 36.8
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.4e-77 295.0 760 36.8
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 2.4e-77 294.3 763 40.5
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.2e-77 293.9 771 35.1
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.2e-77 293.9 742 38.3
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 5.4e-77 293.1 752 36.7
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.2e-76 292.0 761 35.9
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.6e-76 291.6 763 36.6
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 6.0e-76 289.7 774 36.0
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 3.0e-75 287.3 771 36.1
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 3.9e-75 287.0 748 36.6
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 3.9e-75 287.0 746 36.7
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 5.1e-75 286.6 805 34.9
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 8.7e-75 285.8 776 38.4
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.5e-74 285.0 782 34.7
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.9e-74 284.6 769 35.1
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 2.5e-74 284.3 773 34.4
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 3.3e-74 283.9 734 36.6
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 7.3e-74 282.7 751 36.9
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.6e-73 281.6 769 36.7
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 3.6e-73 280.4 766 36.3
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 1.5e-71 275.0 782 34.3
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 2.0e-71 274.6 795 36.0
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.4e-69 267.7 718 35.9
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 9.3e-69 265.8 751 34.1
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.1e-68 264.6 637 37.7
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 6.0e-68 263.1 754 36.7
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 7.9e-68 262.7 720 34.2
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 1.0e-67 262.3 712 34.7
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 3.9e-67 260.4 708 38.6
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 5.1e-67 260.0 695 36.7
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 6.6e-67 259.6 755 35.0
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 6.6e-67 259.6 756 34.7
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 4.3e-66 256.9 701 34.4
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.8e-65 254.2 765 35.9
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 8.1e-65 252.7 730 36.6
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.4e-64 251.9 758 33.1
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 4.0e-64 250.4 707 36.5
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 6.9e-64 249.6 729 37.4
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 4.5e-63 246.9 766 34.6
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 2.2e-62 244.6 665 35.6
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.9e-62 243.4 715 36.2
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 4.9e-62 243.4 822 33.6
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 2.4e-61 241.1 868 32.4
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 7.1e-61 239.6 818 34.1
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 9.3e-61 239.2 668 38.9
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 4.6e-60 236.9 793 31.9
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 1.8e-59 235.0 705 36.2
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 5.1e-59 233.4 744 33.1
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 8.7e-59 232.6 627 35.2
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.5e-58 231.9 730 33.6
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 3.3e-58 230.7 682 35.6
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.3e-57 228.8 720 33.6
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 8.1e-57 226.1 748 35.3
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.1e-56 225.7 647 34.0
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 1.1e-56 225.7 764 31.0
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.0e-56 223.8 668 35.2
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 2.0e-55 221.5 691 32.1
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 2.0e-55 221.5 722 34.6
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.6e-55 221.1 631 33.8
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 3.4e-55 220.7 691 32.9
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 5.8e-55 219.9 768 32.4
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 1.0e-54 219.2 667 33.1
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 1.3e-54 218.8 664 34.2
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.8e-54 217.2 585 37.3
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 6.5e-54 216.5 685 33.4
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.1e-53 215.7 682 33.4
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.1e-53 215.7 823 33.3
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 1.4e-53 215.3 758 34.4
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.2e-53 214.2 647 33.2
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 4.2e-53 213.8 758 32.5
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 2.7e-52 211.1 641 32.3
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 3.5e-52 210.7 670 33.7
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 7.9e-52 209.5 757 31.7
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 3.9e-51 207.2 685 34.7
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 5.1e-51 206.8 756 33.9
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 8.7e-51 206.1 808 28.6
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.5e-50 204.5 703 31.6
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 3.3e-50 204.1 723 32.8
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 1.6e-49 201.8 702 30.9
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 6.3e-49 199.9 580 38.1
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 1.4e-48 198.7 771 33.1
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 6.9e-48 196.4 683 34.0
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 6.9e-48 196.4 691 31.8
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.0e-47 194.9 685 31.1
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 2.9e-46 191.0 600 32.3
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.0e-43 181.0 673 32.4
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 8.7e-43 179.5 612 34.6
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.5e-42 178.7 443 37.0
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 9.7e-42 176.0 807 29.5
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.6e-41 175.3 735 29.1
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 2.2e-41 174.9 797 30.9
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 6.3e-41 173.3 702 31.5
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.8e-40 171.8 682 32.6
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 9.0e-40 169.5 612 33.0
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 9.0e-40 169.5 622 32.2
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.0e-39 168.3 690 29.9
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 4.5e-39 167.2 682 33.4
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 7.7e-39 166.4 769 29.8
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 7.7e-39 166.4 652 36.5
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 2.7e-36 157.9 727 29.4
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.3e-33 149.1 614 33.9
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 4.8e-33 147.1 644 36.0
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.2e-31 142.5 715 27.7
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 2.6e-31 141.4 733 29.7
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 4.5e-31 140.6 158 51.9
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 8.5e-30 136.3 855 28.2
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.7e-28 130.6 362 35.4
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 6.1e-28 130.2 653 30.6
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.8e-27 128.6 254 38.6
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 4.4e-26 124.0 840 27.5
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 7.4e-26 123.2 732 28.1
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 3.1e-24 117.9 166 44.6
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 2.0e-23 115.2 169 46.7
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 7.7e-23 113.2 558 30.6
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 6.5e-22 110.2 141 48.9
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.9e-21 108.6 443 32.7
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 3.2e-21 107.8 861 26.8
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 4.2e-21 107.5 299 35.5
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.6e-20 105.5 611 28.5
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 6.1e-20 103.6 759 27.0
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 2.6e-18 98.2 799 27.7
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.8e-16 92.0 309 34.0
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.2e-15 89.4 393 29.8
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.3e-14 85.9 182 36.8
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.5e-14 83.2 200 35.0
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 1.9e-13 82.0 165 38.2
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 7.2e-13 80.1 154 40.9
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 8.0e-12 76.6 50 78.0
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.7e-09 67.8 230 28.3
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 4.8e-09 67.4 414 31.6
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.1e-08 66.2 45 66.7
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.8e-08 65.5 44 61.4
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 5.4e-08 63.9 111 42.3
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 8.5e-06 56.6 118 43.2
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 8.5e-06 56.6 160 31.9


User provided reference genes

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