Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 4.6e-27 124.0 71 100.0
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 1.8e-23 112.1 71 90.1
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 5.8e-22 107.1 71 90.1
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 3.2e-20 101.3 71 83.1
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 3.2e-20 101.3 71 83.1
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 4.1e-20 100.9 71 87.3
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 4.1e-20 100.9 71 87.3
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 4.1e-20 100.9 71 87.3
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 4.1e-20 100.9 71 87.3
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 4.1e-20 100.9 71 87.3
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 1.6e-16 89.0 60 88.3
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 1.8e-15 85.5 66 80.3
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 4.0e-15 84.3 64 78.1
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 1.2e-14 82.8 64 73.4
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 7.5e-14 80.1 64 73.4
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 1.3e-13 79.3 64 78.1
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 1.4e-12 75.9 65 70.8
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 2.4e-12 75.1 64 71.9
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 9.2e-12 73.2 64 75.0
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 1.2e-11 72.8 66 65.2
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 1.6e-11 72.4 51 78.4
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 2.1e-11 72.0 66 65.2
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 2.7e-11 71.6 62 69.4
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 3.5e-11 71.2 71 66.2
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 6.0e-11 70.5 64 73.4
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 1.0e-10 69.7 64 65.6
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 1.7e-10 68.9 62 66.1
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 1.7e-10 68.9 65 69.2
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 2.3e-10 68.6 64 64.1
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 8.6e-10 66.6 66 66.7
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 1.5e-09 65.9 64 67.2
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 1.5e-09 65.9 71 64.8
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 1.9e-09 65.5 64 62.5
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 1.9e-09 65.5 64 62.5
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 2.5e-09 65.1 66 59.1
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 4.3e-09 64.3 66 62.1
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 7.3e-09 63.5 50 72.0
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 7.3e-09 63.5 67 62.7
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 9.5e-09 63.2 67 59.7
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 1.6e-08 62.4 71 63.4
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 1.6e-08 62.4 66 57.6
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 1.6e-08 62.4 42 81.0
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 2.1e-08 62.0 60 61.7
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 2.1e-08 62.0 66 62.1
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 2.8e-08 61.6 60 61.7
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 2.8e-08 61.6 66 57.6
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 2.8e-08 61.6 62 62.9
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 2.8e-08 61.6 43 79.1
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 4.7e-08 60.8 62 62.9
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 4.7e-08 60.8 41 85.4
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 6.2e-08 60.5 67 62.7
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 8.1e-08 60.1 66 57.6
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 8.1e-08 60.1 64 57.8
Ah.03g142930 Amaranthus hybridus HOM05D007812 ORTHO05D009912 1.8e-07 58.9 68 58.8
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 1.8e-07 58.9 36 88.9
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 2.4e-07 58.5 67 55.2
Ciclev10026913m.g Citrus clementina HOM05D007812 ORTHO05D009912 3.1e-07 58.2 66 62.1
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 4.0e-07 57.8 37 83.8
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 4.0e-07 57.8 37 83.8
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 4.0e-07 57.8 37 83.8
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 4.0e-07 57.8 38 81.6
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 6.8e-07 57.0 71 54.9
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 6.8e-07 57.0 36 86.1
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 6.8e-07 57.0 42 76.2
Peaxi162Scf00066g01714 Petunia axillaris HOM05D007812 ORTHO05D009912 6.8e-07 57.0 64 56.2
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 8.9e-07 56.6 36 83.3
ATR0716G008 Amborella trichopoda HOM05D007812 ORTHO05D009912 1.5e-06 55.8 66 54.5
PGSC0003DMG400004846 Solanum tuberosum HOM05D007812 ORTHO05D009912 2.0e-06 55.5 55 58.2
Nn8g38844 Nelumbo nucifera HOM05D007812 ORTHO05D009912 2.6e-06 55.1 66 54.5
CAN.G1040.8 Capsicum annuum HOM05D007812 ORTHO05D009912 3.4e-06 54.7 38 76.3
Nitab4.5_0000255g0170 Nicotiana tabacum HOM05D007812 ORTHO05D009912 3.4e-06 54.7 55 60.0


User provided reference genes

Program Settings