Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.5e-83 312.8 158 100.0
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 5.1e-63 244.6 141 89.4
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 5.1e-63 244.6 141 89.4
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 1.5e-62 243.0 142 88.0
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 7.4e-62 240.7 140 87.1
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 7.4e-62 240.7 140 87.1
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 9.7e-62 240.4 140 86.4
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.7e-61 239.6 142 87.3
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 1.7e-61 239.6 142 87.3
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.7e-61 239.6 142 87.3
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.1e-60 235.3 144 84.0
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 4.1e-60 235.0 141 85.8
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 7.0e-60 234.2 141 85.8
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 2.6e-59 232.3 140 84.3
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.3e-50 203.4 144 73.6
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 7.2e-49 197.6 148 70.9
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 9.4e-49 197.2 144 70.1
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.1e-48 196.1 148 69.6
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.8e-47 191.0 148 69.6
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 4.4e-46 188.3 141 69.5
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 4.8e-45 184.9 149 67.8
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 4.8e-45 184.9 148 67.6
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 6.3e-45 184.5 149 67.8
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 3.5e-43 178.7 140 69.3
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 4.5e-43 178.3 148 66.9
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 2.2e-42 176.0 140 68.6
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 2.2e-42 176.0 140 68.6
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.2e-40 170.2 133 64.7
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 4.0e-39 165.2 144 65.3
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.2e-38 163.7 132 62.9
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.2e-38 163.7 132 62.9
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 2.0e-38 162.9 140 60.7
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.6e-38 162.5 132 62.1
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 4.4e-38 161.8 138 60.9
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 5.7e-38 161.4 138 60.1
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 9.8e-38 160.6 145 60.0
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 2.2e-37 159.5 134 62.7
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 4.9e-37 158.3 139 59.0
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 6.3e-37 157.9 144 59.0
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.4e-36 156.8 148 58.1
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.4e-36 156.8 133 63.9
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 1.8e-36 156.4 151 58.3
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.8e-36 156.4 145 60.0
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.8e-36 156.4 134 61.9
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 3.1e-36 155.6 140 61.4
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 3.1e-36 155.6 140 58.6
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 5.4e-36 154.8 138 58.7
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 9.2e-36 154.1 139 57.6
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 2.7e-35 152.5 139 58.3
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 2.7e-35 152.5 151 58.3
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 5.9e-35 151.4 139 58.3
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 5.9e-35 151.4 132 61.4
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 1.0e-34 150.6 158 52.5
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.3e-34 150.2 157 53.5
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.7e-34 149.8 136 55.1
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 1.7e-34 149.8 141 54.6
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.7e-34 149.8 146 58.9
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 2.3e-34 149.4 151 56.3
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 2.3e-34 149.4 141 58.9
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.9e-34 149.1 139 54.7
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 2.9e-34 149.1 135 60.0
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 3.8e-34 148.7 141 58.2
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 5.0e-34 148.3 151 55.0
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 6.6e-34 147.9 144 56.2
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 4.3e-33 145.2 154 53.2
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 4.3e-33 145.2 154 53.2
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 4.3e-33 145.2 145 57.9
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 5.6e-33 144.8 139 55.4
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 7.3e-33 144.4 137 55.5
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 1.2e-32 143.7 143 55.2
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.2e-32 143.7 144 55.6
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.2e-32 143.7 139 54.7
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.6e-32 143.3 149 53.0
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.1e-32 142.9 154 51.3
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.6e-32 142.1 139 54.7
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 3.6e-32 142.1 159 53.5
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 4.7e-32 141.7 153 52.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 6.1e-32 141.4 144 56.9
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 6.1e-32 141.4 142 54.2
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 8.0e-32 141.0 134 56.0
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.8e-31 139.8 137 56.9
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 2.3e-31 139.4 140 55.7
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 3.0e-31 139.0 146 52.7
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.5e-30 136.7 135 54.1
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 2.6e-30 136.0 134 53.7
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 7.5e-30 134.4 134 52.2
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 9.8e-30 134.0 144 47.9
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 2.9e-29 132.5 137 51.8
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 2.9e-29 132.5 134 52.2
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 4.9e-29 131.7 131 55.0
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 8.3e-29 131.0 141 53.2
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.4e-28 130.2 146 49.3
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.4e-28 129.4 184 44.6
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 4.1e-28 128.6 69 79.7
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 1.2e-27 127.1 142 50.0
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 5.9e-27 124.8 142 47.2
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 3.0e-26 122.5 144 45.8
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 3.0e-26 122.5 68 79.4
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 3.0e-26 122.5 149 47.7
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.9e-26 122.1 196 40.3
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 1.1e-25 120.6 124 53.2
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.5e-25 120.2 142 48.6
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 5.6e-25 118.2 88 60.2
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 5.6e-25 118.2 135 49.6
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.2e-24 117.1 89 61.8
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.2e-24 117.1 64 79.7
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.7e-21 106.7 125 44.8
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.7e-21 105.5 149 43.0
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 4.1e-20 102.1 88 56.8
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 4.1e-20 102.1 88 56.8
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 3.5e-19 99.0 54 75.9
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 6.0e-19 98.2 54 77.8
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 7.8e-19 97.8 149 40.9
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 5.0e-18 95.1 61 63.9
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 6.6e-18 94.7 59 67.8
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 1.9e-17 93.2 57 68.4
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 5.6e-17 91.7 88 46.6
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 2.8e-16 89.4 64 57.8
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 3.6e-16 89.0 61 62.3
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 5.2e-15 85.1 59 62.7
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 5.2e-15 85.1 111 45.9
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.6e-14 82.8 118 40.7
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 2.1e-11 73.2 57 56.1
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.3e-09 64.7 33 84.8
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 3.6e-08 62.4 39 69.2
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.8e-07 60.1 59 57.6


User provided reference genes

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