Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR087490 Cardamine hirsuta HOM05D007991 ORTHO05D010158 4.0e-41 171.0 88 100.0
AT3G12960 Arabidopsis thaliana HOM05D007991 ORTHO05D010158 1.4e-30 136.0 88 80.7
Carub.0003s1230 Capsella rubella HOM05D007991 ORTHO05D010158 1.5e-27 125.9 88 77.3
BcaC09g48284 Brassica carinata HOM05D007991 ORTHO05D010158 4.0e-25 117.9 90 74.4
C01p52180 Brassica napus HOM05D007991 ORTHO05D010158 4.0e-25 117.9 90 74.4
BolC1t05158H Brassica oleracea HOM05D007991 ORTHO05D010158 4.0e-25 117.9 90 74.4
Sp3g11110 Schrenkiella parvula HOM05D007991 ORTHO05D010158 9.0e-25 116.7 90 73.3
BraA01t04089Z Brassica rapa HOM05D007991 ORTHO05D010158 3.4e-24 114.8 90 73.3
BcaB04g21024 Brassica carinata HOM05D007991 ORTHO05D010158 4.5e-24 114.4 90 72.2
Medtr2g069650 Medicago truncatula HOM05D007991 ORTHO05D010158 1.7e-23 112.5 87 70.1
Thhalv10022193m.g Eutrema salsugineum HOM05D007991 ORTHO05D010158 4.2e-22 107.8 91 70.3
AL3G24640 Arabidopsis lyrata HOM05D007991 ORTHO05D010158 3.3e-19 98.2 61 82.0
TPR.G9765 Trifolium pratense HOM05D007991 ORTHO05D010158 1.8e-17 92.4 80 65.0
Aa31LG8G190 Aethionema arabicum HOM05D007991 ORTHO05D010158 4.1e-17 91.3 78 60.3
Aqoxy6G00820 Aquilegia oxysepala HOM05D007991 ORTHO05D010158 5.3e-17 90.9 71 64.8
Ca_03685_v3 Cicer arietinum L. HOM05D007991 ORTHO05D010158 5.3e-17 90.9 79 64.6
Ciclev10023629m.g Citrus clementina HOM05D007991 ORTHO05D010158 1.0e-15 86.7 98 51.0
Cpa.g.sc10.36 Carica papaya HOM05D007991 ORTHO05D010158 1.7e-15 85.9 67 67.2
Manes.06G170500 Manihot esculenta HOM05D007991 ORTHO05D010158 2.2e-15 85.5 70 65.7
Manes.06G170901 Manihot esculenta HOM05D007991 ORTHO05D010158 2.2e-15 85.5 68 67.6
Prupe.4G140900 Prunus persica HOM05D007991 ORTHO05D010158 3.8e-15 84.7 57 71.9
Lalb_Chr19g0133391 Lupinus albus HOM05D007991 ORTHO05D010158 5.0e-15 84.3 72 58.3
Atru.chr8.1056 Acer truncatum HOM05D007991 ORTHO05D010158 6.5e-15 84.0 74 63.5
Glyma.08G172800 Glycine max HOM05D007991 ORTHO05D010158 6.5e-15 84.0 74 60.8
Lsat_1_v5_gn_7_112301 Lactuca sativa HOM05D007991 ORTHO05D010158 8.5e-15 83.6 53 79.2
Nn7g37867 Nelumbo nucifera HOM05D007991 ORTHO05D010158 1.4e-14 82.8 76 61.8
Lj3g0014492 Lotus japonicus HOM05D007991 ORTHO05D010158 2.5e-14 82.0 67 62.7
QL04p074011 Quercus lobata HOM05D007991 ORTHO05D010158 4.2e-14 81.3 84 58.3
TWI39G0184 Tripterygium wilfordii HOM05D007991 ORTHO05D010158 5.5e-14 80.9 55 72.7
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 7.2e-14 80.5 79 57.0
Gohir.A11G002600 Gossypium hirsutum HOM05D007991 ORTHO05D010158 7.2e-14 80.5 54 74.1
MD05G1219200 Malus domestica HOM05D007991 ORTHO05D010158 7.2e-14 80.5 72 56.9
PGR042G3415 Punica granatum HOM05D007991 ORTHO05D010158 7.2e-14 80.5 55 70.9
ECA236G0423 Erigeron canadensis HOM05D007991 ORTHO05D010158 9.4e-14 80.1 61 68.9
Lalb_Chr03g0031611 Lupinus albus HOM05D007991 ORTHO05D010158 1.6e-13 79.3 53 71.7
Psat1g011440 Pisum sativum HOM05D007991 ORTHO05D010158 1.6e-13 79.3 55 70.9
Ah.07g206310 Amaranthus hybridus HOM05D007991 ORTHO05D010158 2.1e-13 79.0 74 56.8
ClCG11G016360 Citrullus lanatus HOM05D007991 ORTHO05D010158 2.1e-13 79.0 90 55.6
ClCG11G016370 Citrullus lanatus HOM05D007991 ORTHO05D010158 2.1e-13 79.0 90 55.6
COL.COLO4_28875 Corchorus olitorius HOM05D007991 ORTHO05D010158 2.1e-13 79.0 76 53.9
GSVIVG01035227001 Vitis vinifera HOM05D007991 ORTHO05D010158 2.1e-13 79.0 73 63.0
MBI02_g12653_MAGBIO Magnolia biondii HOM05D007991 ORTHO05D010158 2.7e-13 78.6 64 67.2
GSVIVG01012568001 Vitis vinifera HOM05D007991 ORTHO05D010158 2.7e-13 78.6 71 60.6
COL.COLO4_04148 Corchorus olitorius HOM05D007991 ORTHO05D010158 3.6e-13 78.2 53 71.7
Gorai.007G003200 Gossypium raimondii HOM05D007991 ORTHO05D010158 3.6e-13 78.2 54 72.2
Sc16g0005380 Simmondsia chinensis HOM05D007991 ORTHO05D010158 3.6e-13 78.2 72 59.7
CAN.G943.33 Capsicum annuum HOM05D007991 ORTHO05D010158 4.6e-13 77.8 54 70.4
FAN16G1552 Fragaria x ananassa HOM05D007991 ORTHO05D010158 4.6e-13 77.8 80 53.8
Solyc07g066400.1 Solanum lycopersicum HOM05D007991 ORTHO05D010158 4.6e-13 77.8 54 70.4
RcHm_v2.0_Chr5g0026701 Rosa chinensis HOM05D007991 ORTHO05D010158 6.1e-13 77.4 87 49.4
FAN25G2658 Fragaria x ananassa HOM05D007991 ORTHO05D010158 7.9e-13 77.0 80 53.8
Peaxi162Scf00452g00812 Petunia axillaris HOM05D007991 ORTHO05D010158 7.9e-13 77.0 55 67.3
PGSC0003DMG400022239 Solanum tuberosum HOM05D007991 ORTHO05D010158 7.9e-13 77.0 54 70.4
CiPaw.04G012700 Carya illinoinensis HOM05D007991 ORTHO05D010158 1.0e-12 76.6 88 51.1
Gohir.D11G002200 Gossypium hirsutum HOM05D007991 ORTHO05D010158 1.0e-12 76.6 54 70.4
MELO3C010561.2 Cucumis melo HOM05D007991 ORTHO05D010158 1.4e-12 76.3 70 60.0
Phvul.005G056100 Phaseolus vulgaris HOM05D007991 ORTHO05D010158 1.4e-12 76.3 79 50.6
EL10Ac4g08566 Beta vulgaris HOM05D007991 ORTHO05D010158 2.3e-12 75.5 75 54.7
FAN11G2864 Fragaria x ananassa HOM05D007991 ORTHO05D010158 2.3e-12 75.5 80 52.5
FAN21G1902 Fragaria x ananassa HOM05D007991 ORTHO05D010158 2.3e-12 75.5 80 52.5
Sopen07g034570 Solanum pennellii HOM05D007991 ORTHO05D010158 2.3e-12 75.5 54 70.4
Cfa019429 Carpinus fangiana HOM05D007991 ORTHO05D010158 3.0e-12 75.1 50 72.0
HanXRQChr11g0334671 Helianthus annuus HOM05D007991 ORTHO05D010158 3.9e-12 74.7 59 66.1
CANSAT80G1088 Cannabis sativa HOM05D007991 ORTHO05D010158 8.8e-12 73.6 65 56.9
Duzib205G1447 Durio zibethinus HOM05D007991 ORTHO05D010158 2.0e-11 72.4 59 62.7
Sed0025657 Sechium edule HOM05D007991 ORTHO05D010158 4.3e-11 71.2 74 56.8
unitig_8.g4768 Utricularia gibba HOM05D007991 ORTHO05D010158 4.8e-10 67.8 53 67.9
PSO675G0275 Papaver somniferum HOM05D007991 ORTHO05D010158 8.2e-10 67.0 62 56.5
Nn4g23994 Nelumbo nucifera HOM05D007991 ORTHO05D010158 1.1e-09 66.6 75 53.3
SalBow2G0434 Salvia bowleyana HOM05D007991 ORTHO05D010158 3.1e-09 65.1 76 55.3
Nitab4.5_0008437g0010 Nicotiana tabacum HOM05D007991 ORTHO05D010158 4.1e-09 64.7 78 50.0
MD05G1300500 Malus domestica HOM05D007991 ORTHO05D010158 5.3e-09 64.3 48 66.7
CSS0001388 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 6.9e-09 63.9 69 53.6
CSS0033446 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 9.1e-09 63.5 57 59.6
Os08g0104400 Oryza sativa ssp. japonica HOM05D007991 ORTHO05D010158 2.6e-08 62.0 63 47.6
Zm00001eb260130 Zea mays HOM05D007991 ORTHO05D010158 1.0e-07 60.1 65 49.2


User provided reference genes

Program Settings