Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.1e-116 423.3 211 100.0
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 5.2e-111 404.4 211 95.3
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 2.6e-110 402.1 211 94.8
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.7e-109 399.4 211 93.4
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 2.2e-109 399.1 211 93.8
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 2.8e-109 398.7 211 93.8
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 5.6e-105 384.4 211 89.6
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 1.2e-102 376.7 211 86.7
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 3.4e-102 375.2 211 86.7
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 2.7e-99 365.5 215 85.6
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 2.7e-99 365.5 204 86.3
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 1.0e-98 363.6 204 85.8
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 1.2e-88 330.1 192 84.4
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 1.8e-87 326.2 209 75.1
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 4.0e-87 325.1 209 74.6
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 8.9e-87 323.9 209 74.2
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 8.9e-87 323.9 209 74.2
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 8.9e-87 323.9 209 74.2
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 4.1e-84 315.1 209 73.7
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 7.1e-84 314.3 209 71.8
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 1.1e-81 307.0 195 73.8
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 1.5e-78 296.6 210 68.6
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 8.4e-77 290.8 210 67.6
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.9e-76 289.7 212 67.0
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.2e-76 288.9 213 67.1
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.2e-76 288.9 213 67.1
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 5.4e-76 288.1 213 65.7
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 5.4e-76 288.1 209 68.9
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 7.1e-76 287.7 205 68.3
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 9.3e-76 287.3 213 66.7
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 1.2e-75 287.0 217 65.9
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 1.6e-75 286.6 212 67.5
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 2.1e-75 286.2 213 66.2
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 4.6e-75 285.0 212 66.5
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 6.0e-75 284.6 212 66.0
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 7.8e-75 284.3 213 66.7
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 7.8e-75 284.3 212 65.6
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.3e-74 283.5 213 65.7
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 2.3e-74 282.7 210 66.2
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 3.9e-74 282.0 213 64.3
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 5.1e-74 281.6 212 66.0
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 5.1e-74 281.6 209 66.0
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 5.1e-74 281.6 210 64.8
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.1e-73 280.4 185 71.9
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.9e-73 279.6 207 66.2
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.9e-73 279.6 191 70.7
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 2.5e-73 279.3 212 65.1
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 2.5e-73 279.3 210 65.7
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 2.5e-73 279.3 213 63.4
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 2.5e-73 279.3 212 65.1
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 5.6e-73 278.1 205 66.3
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 5.6e-73 278.1 205 66.3
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.3e-73 277.7 207 65.7
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 7.3e-73 277.7 210 63.8
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 9.6e-73 277.3 205 66.3
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.3e-72 276.9 210 64.8
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 1.3e-72 276.9 212 64.6
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 1.6e-72 276.6 210 64.8
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 2.1e-72 276.2 205 65.4
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 3.6e-72 275.4 209 65.6
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 3.6e-72 275.4 210 64.8
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 6.2e-72 274.6 205 65.9
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 8.1e-72 274.2 205 64.4
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 8.1e-72 274.2 212 63.2
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.1e-71 273.9 212 64.2
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 1.8e-71 273.1 211 63.5
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 2.4e-71 272.7 212 65.6
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 3.1e-71 272.3 205 63.4
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 4.0e-71 271.9 205 63.4
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 4.0e-71 271.9 190 68.4
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 6.9e-71 271.2 210 64.8
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 6.9e-71 271.2 211 64.9
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 6.9e-71 271.2 216 63.4
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 3.4e-70 268.9 213 62.9
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 3.4e-70 268.9 206 63.6
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 3.4e-70 268.9 212 62.7
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 2.2e-69 266.2 213 62.9
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 2.2e-69 266.2 213 63.4
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 2.2e-69 266.2 212 62.7
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 4.9e-69 265.0 213 63.4
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 6.4e-69 264.6 227 60.4
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.1e-68 263.8 196 67.3
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.9e-68 263.1 205 62.9
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 4.2e-68 261.9 213 62.0
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 4.2e-68 261.9 205 62.4
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 7.1e-68 261.2 211 61.6
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 3.5e-67 258.8 211 61.1
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 1.3e-66 256.9 214 62.6
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 5.1e-66 255.0 209 58.4
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 3.3e-65 252.3 219 58.4
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 5.6e-65 251.5 212 61.8
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 4.8e-64 248.4 213 60.6
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 4.8e-64 248.4 213 60.1
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 4.8e-64 248.4 213 60.1
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 4.8e-64 248.4 213 60.1
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 6.2e-64 248.1 210 58.6
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.3e-61 240.4 237 54.4
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 1.7e-61 240.0 193 59.1
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 6.4e-61 238.0 200 56.0
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 3.2e-60 235.7 181 65.2
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 7.9e-59 231.1 208 54.8
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 8.7e-58 227.6 154 70.1
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 1.5e-57 226.9 203 58.1
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 3.7e-56 222.2 180 58.3
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 4.8e-56 221.9 185 56.2
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.1e-55 220.7 210 54.8
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.8e-55 219.9 156 67.3
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 3.4e-54 215.7 214 52.8
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 3.8e-53 212.2 142 67.6
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 1.3e-50 203.8 189 51.9
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.6e-46 189.5 211 50.7
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 7.4e-41 171.4 207 44.4
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 6.9e-39 164.9 113 63.7
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 3.3e-33 146.0 212 41.5
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 1.4e-31 140.6 192 46.9
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 1.5e-30 137.1 136 56.6
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 6.5e-29 131.7 167 42.5
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 1.4e-28 130.6 82 81.7
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 1.9e-28 130.2 88 76.1
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 7.2e-28 128.3 77 84.4
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 7.2e-28 128.3 79 70.9
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 4.7e-27 125.6 180 38.9
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 7.0e-23 111.7 107 45.8
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 7.7e-22 108.2 63 71.4
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 7.7e-22 108.2 160 45.6
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 5.5e-20 102.1 156 44.9
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 1.0e-18 97.8 105 46.7
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 2.3e-18 96.7 150 46.0
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 1.8e-15 87.0 79 54.4
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 2.9e-13 79.7 46 73.9
BraA05t22495Z Brassica rapa HOM05D005838 ORTHO05D007177 9.4e-12 74.7 47 80.9
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 6.3e-08 62.0 49 61.2
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.6e-06 57.4 41 63.4
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 3.5e-06 56.2 47 57.4


User provided reference genes

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