Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.5e-92 342.8 170 100.0
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.2e-87 324.7 170 93.5
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 7.2e-87 323.9 170 92.4
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.0e-85 320.1 167 92.2
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 6.7e-85 317.4 172 90.7
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.1e-84 316.6 169 89.9
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 3.3e-84 315.1 169 89.3
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 4.4e-84 314.7 169 88.8
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 4.4e-84 314.7 169 88.8
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 4.4e-84 314.7 169 88.8
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 7.4e-84 313.9 168 91.1
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 9.7e-84 313.5 169 88.8
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 9.7e-84 313.5 169 88.8
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 5.9e-81 304.3 170 87.1
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.0e-73 279.3 166 80.1
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 9.2e-50 200.7 146 65.1
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.7e-49 199.1 146 63.7
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 5.9e-49 198.0 146 63.7
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 7.8e-49 197.6 146 63.7
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 3.0e-48 195.7 142 64.8
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.5e-47 193.4 146 63.0
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.5e-47 193.4 146 62.3
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 3.3e-47 192.2 143 62.9
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 3.3e-47 192.2 142 63.4
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 3.3e-47 192.2 143 62.9
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 3.3e-47 192.2 142 63.4
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 4.3e-47 191.8 142 63.4
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 5.6e-47 191.4 146 61.0
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 9.5e-47 190.7 142 62.7
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 9.5e-47 190.7 142 62.7
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 9.5e-47 190.7 142 62.7
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 9.5e-47 190.7 142 62.7
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 9.5e-47 190.7 142 62.7
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.7e-46 188.3 142 62.0
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 6.2e-46 188.0 146 60.3
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 8.0e-46 187.6 142 62.0
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.4e-45 186.8 148 60.1
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 1.8e-45 186.4 146 60.3
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 1.8e-45 186.4 146 59.6
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.8e-45 186.4 146 58.9
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 5.2e-45 184.9 143 60.8
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 6.8e-45 184.5 140 61.4
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 6.8e-45 184.5 146 59.6
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 6.8e-45 184.5 148 59.5
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 8.9e-45 184.1 143 60.8
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 2.0e-44 183.0 146 59.6
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 2.0e-44 183.0 146 58.9
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.6e-44 182.6 146 58.9
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 3.4e-44 182.2 146 58.2
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 3.4e-44 182.2 143 59.4
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 9.8e-44 180.6 139 61.2
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 9.8e-44 180.6 136 62.5
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.7e-43 179.9 143 59.4
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.2e-43 179.5 146 56.8
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 2.2e-43 179.5 139 61.2
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 2.2e-43 179.5 140 61.4
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.2e-43 179.5 146 59.6
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 2.9e-43 179.1 146 57.5
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 4.9e-43 178.3 146 59.6
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 6.4e-43 177.9 146 58.2
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 6.4e-43 177.9 146 57.5
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 6.4e-43 177.9 146 57.5
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.4e-42 176.8 146 56.2
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 1.4e-42 176.8 140 59.3
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 1.4e-42 176.8 136 62.5
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.9e-42 176.4 139 59.0
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.9e-42 176.4 146 58.2
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 1.9e-42 176.4 146 56.8
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 2.4e-42 176.0 146 54.8
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 2.4e-42 176.0 139 59.7
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.4e-42 176.0 146 58.2
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 2.4e-42 176.0 146 58.2
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 2.4e-42 176.0 136 61.0
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 2.4e-42 176.0 136 61.0
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 3.2e-42 175.6 139 59.7
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 3.2e-42 175.6 142 59.9
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.2e-42 175.6 146 58.2
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.2e-42 175.6 144 57.6
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 4.1e-42 175.3 146 59.6
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 4.1e-42 175.3 140 59.3
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 9.2e-42 174.1 133 61.7
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 9.2e-42 174.1 133 62.4
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 9.2e-42 174.1 139 58.3
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.2e-41 173.7 142 58.5
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.6e-41 173.3 141 58.9
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.6e-41 173.3 138 58.7
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 2.0e-41 172.9 148 56.1
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.7e-41 172.6 140 58.6
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 3.5e-41 172.2 141 57.4
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 4.6e-41 171.8 140 59.3
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 6.0e-41 171.4 133 60.2
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 7.8e-41 171.0 140 58.6
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.3e-40 170.2 144 56.9
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 1.3e-40 170.2 140 57.1
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.7e-40 169.9 148 54.7
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 2.3e-40 169.5 140 56.4
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.0e-40 169.1 144 56.2
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 3.0e-40 169.1 139 57.6
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.0e-40 169.1 138 59.4
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 5.0e-40 168.3 136 59.6
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 6.6e-40 167.9 139 56.8
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 6.6e-40 167.9 139 56.8
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 8.6e-40 167.5 136 57.4
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.1e-39 167.2 140 56.4
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.9e-39 166.4 140 56.4
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 3.3e-39 165.6 140 55.7
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 3.3e-39 165.6 140 58.6
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.3e-39 165.6 148 56.8
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 4.3e-39 165.2 136 55.1
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 7.3e-39 164.5 139 56.8
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 7.3e-39 164.5 162 52.5
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 3.6e-38 162.2 140 55.7
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 3.6e-38 162.2 142 54.9
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 4.7e-38 161.8 138 58.0
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.1e-37 160.6 138 57.2
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 6.8e-37 157.9 144 53.5
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 8.9e-37 157.5 142 52.1
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.5e-36 156.8 140 53.6
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.9e-35 152.5 140 52.1
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 8.3e-35 151.0 133 51.9
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.4e-34 150.2 114 59.6
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.1e-33 146.4 133 54.9
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 3.9e-32 142.1 107 63.6
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 5.1e-32 141.7 170 43.5
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.4e-28 128.6 110 61.8
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 9.9e-28 127.5 142 43.0
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.2e-25 120.6 161 39.1
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 2.3e-24 116.3 149 40.3
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 2.8e-22 109.4 81 59.3
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 6.9e-21 104.8 153 37.3
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 3.8e-19 99.0 157 35.0
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.8e-19 99.0 142 39.4
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.4e-18 97.1 154 35.7
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 3.2e-18 95.9 79 54.4
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 1.3e-16 90.5 111 45.9
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.0e-16 89.4 144 34.7
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 1.1e-15 87.4 158 35.4
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 5.6e-15 85.1 128 33.6
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 2.8e-14 82.8 166 31.3
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 4.0e-13 79.0 65 61.5
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.4e-12 75.9 111 36.9
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 3.4e-12 75.9 71 47.9
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.7e-11 73.6 67 53.7
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.6e-09 67.0 61 49.2
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 4.6e-09 65.5 161 30.4
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 7.9e-09 64.7 68 47.1
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.7e-06 55.8 91 34.1
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.7e-06 55.8 91 34.1


User provided reference genes

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