Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 2.4e-27 124.8 64 100.0
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.8e-22 108.6 64 85.9
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 7.5e-21 103.2 64 81.2
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 7.5e-21 103.2 64 81.2
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 2.2e-20 101.7 64 79.7
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 2.2e-20 101.7 64 79.7
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 2.2e-20 101.7 64 79.7
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.7e-20 100.9 61 83.6
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 2.1e-15 85.1 64 71.9
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 3.6e-15 84.3 64 68.8
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 8.0e-15 83.2 58 69.0
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 2.3e-14 81.6 59 67.8
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 3.1e-14 81.3 59 67.8
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 6.8e-14 80.1 59 66.1
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.2e-13 79.3 58 67.2
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.5e-13 79.0 57 66.7
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 2.0e-13 78.6 58 65.5
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 5.8e-13 77.0 61 63.9
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 7.5e-13 76.6 58 62.1
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 2.9e-12 74.7 59 64.4
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 4.9e-12 73.9 59 64.4
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 6.4e-12 73.6 59 61.0
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 6.4e-12 73.6 59 62.7
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 6.4e-12 73.6 59 62.7
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 2.4e-11 71.6 57 61.4
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 9.2e-11 69.7 53 62.3
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 9.2e-11 69.7 59 59.3
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.2e-10 69.3 58 55.2
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.6e-10 68.9 54 64.8
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.0e-10 68.6 53 62.3
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 3.5e-10 67.8 59 57.6
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 7.8e-10 66.6 55 54.5
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 56.6
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 56.6
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 56.6
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 56.6
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 56.6
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 56.6
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 56.6
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.3e-09 65.9 58 56.9
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 54.7
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.7e-09 65.5 53 56.6
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 2.3e-09 65.1 53 54.7
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 3.0e-09 64.7 53 54.7
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 3.0e-09 64.7 53 54.7
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 3.9e-09 64.3 53 52.8
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.9e-09 64.3 59 57.6
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 3.9e-09 64.3 55 54.5
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 3.9e-09 64.3 55 52.7
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 5.0e-09 63.9 59 57.6
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 6.6e-09 63.5 53 54.7
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 6.6e-09 63.5 53 52.8
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 8.6e-09 63.2 59 57.6
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.5e-08 62.4 55 56.4
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.9e-08 62.0 56 55.4
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 3.3e-08 61.2 53 52.8
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 3.3e-08 61.2 53 52.8
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 3.3e-08 61.2 55 54.5
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 3.3e-08 61.2 55 50.9
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 4.3e-08 60.8 55 52.7
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 5.6e-08 60.5 59 55.9
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 9.5e-08 59.7 55 47.3
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 1.2e-07 59.3 44 68.2
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 1.2e-07 59.3 52 55.8
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.2e-07 59.3 55 50.9
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 1.6e-07 58.9 53 52.8
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.6e-07 58.9 53 47.2
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 2.8e-07 58.2 44 63.6
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 3.6e-07 57.8 55 50.9
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 4.7e-07 57.4 59 54.2
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 6.2e-07 57.0 49 53.1
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 1.1e-06 56.2 52 51.9
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.1e-06 56.2 55 47.3
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 1.1e-06 56.2 55 50.9
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 1.4e-06 55.8 55 45.5
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.4e-06 55.8 56 46.4
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.4e-06 55.8 55 43.6
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.8e-06 55.5 53 49.1
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 2.3e-06 55.1 55 45.5
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 4.0e-06 54.3 48 58.3
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 4.0e-06 54.3 53 43.4
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 4.0e-06 54.3 48 50.0
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 5.2e-06 53.9 52 46.2
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 5.2e-06 53.9 53 45.3
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 6.8e-06 53.5 53 43.4
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 6.8e-06 53.5 53 43.4
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 6.8e-06 53.5 53 43.4
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 6.8e-06 53.5 53 43.4


User provided reference genes

Program Settings