Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 0.0e+00 1152.5 592 100.0
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 6.0e-266 920.6 610 79.8
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.3e-255 886.3 606 78.2
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.5e-253 879.4 608 77.0
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 8.8e-233 810.4 598 73.6
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 8.8e-233 810.4 598 73.6
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 2.6e-232 808.9 598 73.4
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 5.0e-228 794.7 599 72.1
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 2.5e-227 792.3 596 73.0
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 2.5e-227 792.3 596 73.0
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.2e-208 730.3 643 63.5
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 5.0e-204 714.9 641 61.5
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.2e-200 703.7 656 60.7
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 7.5e-200 701.0 623 62.4
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 2.7e-197 692.6 610 62.5
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.1e-195 687.2 629 62.0
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 1.1e-193 680.6 611 61.4
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.4e-193 680.2 638 60.5
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 1.8e-193 679.9 648 59.3
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 8.3e-191 671.0 609 60.8
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 5.6e-187 658.3 591 61.6
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 3.1e-185 652.5 612 60.1
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 8.9e-185 651.0 448 78.8
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 2.9e-175 619.4 575 61.6
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 6.2e-170 601.7 617 52.8
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 2.0e-168 596.7 631 52.1
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.6e-168 596.3 629 53.1
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 2.2e-167 593.2 637 52.4
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 4.9e-167 592.0 631 51.5
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 4.2e-166 589.0 619 50.9
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.4e-166 588.6 631 52.5
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 3.5e-165 585.9 613 53.7
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 7.9e-165 584.7 626 51.4
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.0e-164 584.3 637 51.8
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 1.3e-164 583.9 621 51.4
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.8e-164 583.6 638 51.4
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 3.0e-164 582.8 632 51.7
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 3.0e-164 582.8 643 53.5
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 5.1e-164 582.0 642 50.9
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.5e-163 580.5 623 52.8
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.5e-163 579.7 632 52.5
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 2.5e-163 579.7 619 51.5
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 3.3e-163 579.3 642 52.5
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 4.3e-163 578.9 634 51.1
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 9.6e-163 577.8 644 51.1
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.6e-162 577.0 626 51.3
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.1e-162 576.6 638 51.1
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 2.8e-162 576.2 631 52.3
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.8e-162 576.2 633 50.9
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.4e-161 573.9 598 52.3
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 6.9e-161 571.6 633 49.8
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 6.9e-161 571.6 629 51.5
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.2e-160 570.9 633 49.4
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 2.0e-160 570.1 648 51.9
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 2.6e-160 569.7 639 51.3
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 4.5e-160 568.9 623 51.7
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.0e-159 567.8 671 48.1
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 2.2e-159 566.6 638 51.4
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.2e-159 566.6 636 50.6
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 2.2e-159 566.6 630 49.7
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 8.4e-159 564.7 651 50.8
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.1e-158 564.3 645 51.6
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 1.1e-158 564.3 625 51.2
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.2e-158 562.8 576 53.3
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 4.2e-158 562.4 599 51.9
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.2e-157 560.8 644 50.3
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 1.2e-157 560.8 615 51.2
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 2.1e-157 560.1 628 51.1
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.1e-157 560.1 683 47.9
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 2.1e-157 560.1 630 50.6
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 6.0e-157 558.5 630 51.1
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 6.0e-157 558.5 637 49.0
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.5e-155 553.9 649 50.5
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 1.9e-155 553.5 641 50.7
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 3.3e-155 552.7 642 51.4
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 5.7e-155 552.0 644 50.2
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.1e-154 550.1 594 51.7
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 2.1e-154 550.1 649 47.9
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 6.2e-154 548.5 643 49.0
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 5.8e-152 542.0 631 48.7
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 1.7e-151 540.4 634 50.0
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.2e-151 540.0 650 50.5
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 4.9e-151 538.9 639 47.4
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 8.4e-151 538.1 574 53.1
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.4e-150 537.3 644 50.0
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.4e-150 537.3 633 50.2
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.9e-150 537.0 615 49.3
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 4.2e-150 535.8 619 49.1
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 5.5e-150 535.4 593 51.1
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 5.5e-150 535.4 617 49.3
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 9.3e-150 534.6 643 48.5
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 6.1e-149 531.9 633 49.0
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 2.3e-148 530.0 643 47.0
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.0e-148 529.6 621 49.8
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 7.4e-147 525.0 637 49.0
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 9.0e-145 518.1 501 55.7
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.5e-144 517.3 628 46.5
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.3e-143 514.2 632 48.7
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.7e-143 513.8 545 51.6
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 3.8e-143 512.7 527 53.1
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 3.2e-142 509.6 529 52.9
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 3.2e-142 509.6 541 51.6
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.6e-141 505.8 561 50.8
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 7.9e-141 505.0 494 55.9
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 1.8e-140 503.8 609 47.9
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 4.3e-139 499.2 585 49.1
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 1.7e-138 497.3 520 52.1
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.8e-138 496.5 629 46.4
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.1e-137 491.5 597 48.4
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.2e-136 491.1 648 45.7
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 7.7e-136 488.4 484 55.4
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 1.0e-135 488.0 587 49.1
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 1.7e-135 487.3 488 52.7
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 5.0e-135 485.7 578 49.8
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 2.7e-133 479.9 558 49.3
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.7e-130 470.7 595 46.4
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.0e-128 463.8 562 49.3
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 7.7e-128 461.8 623 45.7
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 5.0e-127 459.1 615 44.6
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 2.1e-125 453.8 616 45.3
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 8.0e-125 451.8 651 43.5
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.1e-118 431.4 484 49.2
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.1e-117 427.2 470 50.0
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.0e-117 425.2 611 43.5
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.5e-115 421.0 518 47.7
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 9.1e-113 411.8 386 60.6
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 4.5e-112 409.5 598 42.0
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.7e-109 400.2 425 52.2
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 6.1e-109 399.1 607 40.7
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.7e-106 389.8 489 45.8
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.7e-106 389.8 489 45.8
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.4e-105 387.9 471 48.0
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 5.9e-104 382.5 492 43.1
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 7.7e-104 382.1 520 45.4
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 7.5e-91 339.0 522 42.5
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 5.8e-83 312.8 604 38.2
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 3.0e-79 300.4 609 34.5
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.3e-71 275.0 503 36.6
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 6.8e-68 262.7 648 32.3
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 5.3e-52 209.9 413 32.2
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.2e-51 208.8 341 39.6
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 5.5e-49 199.9 286 43.4
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 5.8e-43 179.9 198 46.5
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 3.7e-37 160.6 129 59.7
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 5.0e-26 123.6 239 31.0
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 3.1e-20 104.4 64 70.3
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 3.3e-14 84.3 154 38.3
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 9.4e-09 66.2 39 74.4
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 2.1e-08 65.1 60 58.3


User provided reference genes

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