Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 5.8e-291 1003.4 487 100.0
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 2.5e-257 891.7 493 88.2
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 1.6e-256 889.0 492 88.0
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 2.1e-256 888.6 490 88.4
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 4.7e-256 887.5 492 88.2
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 5.9e-251 870.5 490 86.5
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 4.0e-231 804.7 489 81.8
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 5.2e-231 804.3 488 81.8
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 5.9e-227 790.8 489 81.4
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 3.3e-217 758.4 478 75.9
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 1.8e-199 699.5 488 73.6
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 1.2e-182 643.7 488 63.1
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 4.9e-181 638.3 469 64.6
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 6.4e-181 637.9 461 65.7
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 9.3e-180 634.0 481 63.6
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 2.7e-179 632.5 482 63.1
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 7.9e-179 630.9 485 64.1
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 1.9e-177 626.3 478 62.1
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-177 625.5 479 64.3
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.6e-177 624.8 479 64.3
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 5.6e-177 624.8 473 64.5
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 9.6e-177 624.0 470 64.9
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-176 623.6 479 64.3
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.6e-176 623.2 479 64.3
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.6e-176 623.2 479 64.3
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 1.6e-176 623.2 470 63.8
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.1e-176 622.9 479 64.3
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.1e-176 622.9 479 64.3
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 2.1e-176 622.9 473 64.3
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.8e-176 622.5 479 63.9
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.7e-176 622.1 479 63.9
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.8e-176 621.7 479 64.3
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 6.2e-176 621.3 477 62.9
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 6.2e-176 621.3 469 63.5
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.1e-175 620.5 479 63.9
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.4e-175 620.2 479 64.1
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 1.8e-175 619.8 473 63.8
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 1.8e-175 619.8 476 62.4
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.3e-175 618.2 479 63.9
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 2.6e-174 615.9 478 63.4
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 3.4e-174 615.5 474 63.5
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 4.5e-174 615.1 473 63.6
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 2.9e-173 612.5 477 61.6
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 3.8e-173 612.1 471 62.8
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 1.1e-172 610.5 473 62.8
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 9.3e-172 607.4 401 70.1
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 2.7e-171 605.9 491 58.7
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 6.0e-171 604.7 418 67.7
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 7.9e-171 604.4 474 61.6
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 1.0e-170 604.0 399 69.2
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 1.3e-170 603.6 466 62.7
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 3.9e-170 602.1 488 60.2
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 8.7e-170 600.9 416 67.1
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 1.5e-169 600.1 400 70.0
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 1.9e-169 599.7 469 62.7
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 3.3e-169 599.0 402 68.4
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 1.3e-168 597.0 472 61.7
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 2.1e-168 596.3 473 63.0
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 2.1e-168 596.3 460 62.0
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 2.4e-167 592.8 398 68.8
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 4.1e-167 592.0 399 69.4
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 5.3e-167 591.7 402 69.2
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 2.0e-166 589.7 471 60.5
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 4.5e-166 588.6 400 69.2
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 4.5e-166 588.6 399 68.7
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 1.3e-165 587.0 472 61.2
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 3.8e-165 585.5 402 68.2
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 6.5e-165 584.7 396 70.2
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.4e-164 583.6 397 68.5
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 5.5e-164 581.6 398 68.3
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 7.2e-164 581.3 388 69.6
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 1.6e-163 580.1 485 57.7
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 4.3e-161 572.0 491 57.0
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 1.1e-159 567.4 398 66.3
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 5.3e-159 565.1 421 62.9
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 6.9e-159 564.7 373 69.7
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 2.2e-157 559.7 358 72.3
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 2.1e-155 553.1 402 65.4
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 3.6e-155 552.4 427 62.5
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 5.7e-153 545.0 397 64.2
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 7.4e-153 544.7 400 64.2
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 9.7e-153 544.3 405 64.0
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 9.7e-153 544.3 401 64.8
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 1.3e-152 543.9 365 68.5
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 4.8e-152 542.0 362 68.0
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 1.4e-151 540.4 367 68.1
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 2.5e-148 529.6 347 71.2
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 7.9e-147 524.6 409 61.6
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 2.3e-146 523.1 490 53.7
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 6.7e-146 521.5 482 56.0
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 9.7e-145 517.7 348 69.0
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 8.8e-130 468.0 397 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 1.7e-125 453.8 384 57.8
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 2.5e-116 423.3 291 69.4
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 1.0e-114 417.9 351 59.0
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 3.6e-107 392.9 324 59.0
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 8.3e-104 381.7 405 47.4
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 6.2e-91 339.0 295 56.3
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 1.9e-84 317.4 435 41.8
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 9.6e-84 315.1 211 69.2
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 9.0e-82 308.5 434 40.1
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 8.7e-69 265.4 449 37.6
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 5.5e-63 246.1 299 44.1
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 1.0e-61 241.9 158 70.3
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.1e-58 231.9 398 36.2
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 7.7e-41 172.6 320 33.4
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 1.4e-39 168.3 213 43.2
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 1.0e-32 145.6 296 32.8
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.3e-27 128.6 89 67.4
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 2.7e-22 110.9 59 86.4
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 1.2e-20 105.5 284 28.9
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 2.2e-19 101.3 72 65.3
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 6.5e-08 63.2 80 42.5


User provided reference genes

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