Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 2.9e-64 248.4 129 100.0
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 9.4e-39 163.7 99 83.8
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 1.0e-37 160.2 100 83.0
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 1.5e-36 156.4 99 82.8
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 9.8e-36 153.7 99 78.8
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 2.2e-35 152.5 99 78.8
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 2.4e-34 149.1 99 78.8
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 3.1e-34 148.7 101 81.2
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 5.4e-34 147.9 100 79.0
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 7.0e-34 147.5 101 80.2
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 7.0e-34 147.5 101 80.2
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.2e-33 146.7 99 76.8
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 2.9e-32 142.1 101 77.2
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 3.6e-30 135.2 100 77.0
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 4.7e-30 134.8 100 76.0
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 6.1e-30 134.4 101 75.2
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 1.8e-29 132.9 100 75.0
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 2.3e-29 132.5 100 74.0
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 8.8e-29 130.6 94 71.3
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 9.5e-23 110.5 99 61.6
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 2.3e-21 105.9 94 59.6
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 3.0e-21 105.5 95 62.1
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.0e-21 105.1 94 66.0
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 6.8e-21 104.4 95 64.2
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 8.9e-21 104.0 96 64.6
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.2e-20 103.6 94 64.9
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 1.5e-20 103.2 95 61.1
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 1.5e-20 103.2 94 63.8
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 2.0e-20 102.8 97 57.7
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 4.4e-20 101.7 97 60.8
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 4.4e-20 101.7 94 58.5
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 4.4e-20 101.7 96 57.3
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 4.4e-20 101.7 106 58.5
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 4.4e-20 101.7 95 62.1
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 5.7e-20 101.3 99 58.6
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 5.7e-20 101.3 96 58.3
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 5.7e-20 101.3 94 62.8
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 5.7e-20 101.3 94 59.6
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 5.7e-20 101.3 97 56.7
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 7.5e-20 100.9 93 62.4
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 9.8e-20 100.5 94 60.6
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 9.8e-20 100.5 96 59.4
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.7e-19 99.8 93 55.9
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 2.2e-19 99.4 95 58.9
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 3.7e-19 98.6 96 55.2
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 6.4e-19 97.8 93 57.0
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 8.3e-19 97.4 94 57.4
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 8.3e-19 97.4 94 56.4
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 8.3e-19 97.4 99 57.6
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 1.4e-18 96.7 94 59.6
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 1.8e-18 96.3 93 51.6
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.4e-18 95.9 89 62.9
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 3.2e-18 95.5 110 50.0
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.1e-18 95.1 98 57.1
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 4.1e-18 95.1 98 57.1
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 4.1e-18 95.1 94 55.3
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 7.0e-18 94.4 99 54.5
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 7.0e-18 94.4 95 60.0
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.2e-17 93.6 98 57.1
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.2e-17 93.6 93 53.8
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.6e-17 93.2 93 54.8
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.6e-17 93.2 97 54.6
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 2.0e-17 92.8 94 58.5
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 2.0e-17 92.8 94 55.3
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 4.6e-17 91.7 95 55.8
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 4.6e-17 91.7 96 51.0
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 4.6e-17 91.7 93 53.8
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 7.8e-17 90.9 95 54.7
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 7.8e-17 90.9 93 52.7
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 1.0e-16 90.5 95 57.9
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 1.3e-16 90.1 94 59.6
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 1.7e-16 89.7 94 55.3
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 1.7e-16 89.7 110 50.9
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 1.7e-16 89.7 103 49.5
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 2.3e-16 89.4 93 52.7
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 2.3e-16 89.4 93 51.6
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 2.3e-16 89.4 118 50.0
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.3e-16 89.4 96 53.1
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 3.0e-16 89.0 97 52.6
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 3.0e-16 89.0 94 50.0
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 3.9e-16 88.6 94 53.2
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.9e-16 88.6 97 49.5
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 3.9e-16 88.6 94 57.4
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 6.6e-16 87.8 94 54.3
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.9e-15 86.3 105 48.6
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 4.3e-15 85.1 79 63.3
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 5.6e-15 84.7 94 54.3
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 9.5e-15 84.0 100 54.0
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 9.5e-15 84.0 98 53.1
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 2.1e-14 82.8 93 50.5
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 2.1e-14 82.8 94 48.9
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.1e-14 82.8 109 47.7
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.8e-14 82.4 93 48.4
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 4.7e-14 81.6 94 47.9
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 6.2e-14 81.3 102 45.1
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.8e-13 79.7 92 48.9
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 6.8e-13 77.8 99 46.5
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 6.8e-13 77.8 70 64.3
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 6.8e-13 77.8 103 44.7
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 2.6e-12 75.9 99 48.5
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 3.4e-12 75.5 93 47.3
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 3.4e-12 75.5 91 51.6
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 3.4e-12 75.5 93 47.3
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 4.4e-12 75.1 99 47.5
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 2.2e-11 72.8 98 46.9
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 2.2e-11 72.8 79 50.6
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.9e-11 72.4 85 48.2
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 7.8e-09 64.3 111 36.9
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 1.0e-08 63.9 79 48.1
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 2.3e-08 62.8 94 34.0
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.5e-07 59.3 68 54.4
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.5e-07 59.3 66 48.5
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 6.2e-06 54.7 40 72.5


User provided reference genes

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