Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 5.0e-114 414.5 211 100.0
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 2.7e-99 365.5 213 89.7
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 9.5e-97 357.1 213 88.3
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 4.7e-96 354.8 212 88.2
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 4.6e-91 338.2 217 82.0
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 4.7e-88 328.2 214 80.8
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 1.4e-87 326.6 204 81.4
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 2.2e-85 319.3 212 78.3
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 2.1e-83 312.8 211 76.8
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 6.0e-83 311.2 203 79.8
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 2.3e-82 309.3 205 80.0
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 8.7e-74 280.8 211 72.5
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 1.2e-59 233.8 229 57.2
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 2.1e-59 233.0 176 67.0
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 1.8e-58 229.9 148 71.6
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.8e-58 229.9 215 58.6
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.8e-58 229.9 203 60.1
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 3.0e-58 229.2 212 57.5
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 3.0e-58 229.2 215 58.6
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 1.1e-57 227.3 158 69.6
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 1.1e-57 227.3 206 59.2
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 1.9e-57 226.5 215 57.7
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 2.5e-57 226.1 202 57.4
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 3.3e-57 225.7 165 67.3
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.3e-57 225.7 148 72.3
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 7.4e-57 224.6 203 58.6
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 7.4e-57 224.6 160 70.0
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 9.6e-57 224.2 148 72.3
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 9.6e-57 224.2 160 66.2
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 2.1e-56 223.0 206 58.7
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 4.8e-56 221.9 178 61.2
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 6.2e-56 221.5 207 56.5
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 6.2e-56 221.5 190 61.1
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 8.1e-56 221.1 161 67.7
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 1.1e-55 220.7 211 57.3
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 1.4e-55 220.3 157 68.2
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 1.8e-55 219.9 172 64.5
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 2.4e-55 219.5 198 57.6
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 2.4e-55 219.5 198 59.6
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 3.1e-55 219.2 208 55.8
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 6.9e-55 218.0 156 65.4
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 9.0e-55 217.6 147 68.7
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 1.2e-54 217.2 190 60.0
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.5e-54 216.9 153 66.7
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 1.5e-54 216.9 162 64.8
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 1.5e-54 216.9 179 62.6
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 2.0e-54 216.5 148 68.9
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 2.0e-54 216.5 148 68.9
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 2.0e-54 216.5 162 64.2
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 2.0e-54 216.5 166 66.3
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 2.6e-54 216.1 149 67.1
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 5.8e-54 214.9 164 62.2
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 7.6e-54 214.5 151 68.9
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 1.3e-53 213.8 188 56.9
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 2.2e-53 213.0 149 65.8
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 2.9e-53 212.6 179 59.8
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 3.8e-53 212.2 164 62.2
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 3.8e-53 212.2 149 63.8
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 6.5e-53 211.5 172 58.1
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 6.5e-53 211.5 149 65.1
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.4e-52 210.3 147 66.0
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 3.2e-52 209.1 167 61.7
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 4.2e-52 208.8 157 61.8
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 5.5e-52 208.4 149 63.1
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 5.5e-52 208.4 142 66.9
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 7.1e-52 208.0 147 64.6
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 7.1e-52 208.0 188 55.9
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 9.3e-52 207.6 211 54.0
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 2.1e-51 206.5 150 61.3
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 7.9e-51 204.5 149 62.4
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.0e-50 204.1 212 55.2
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 1.8e-50 203.4 172 58.7
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 2.3e-50 203.0 150 62.7
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.9e-49 199.9 194 55.7
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.5e-49 199.5 194 55.7
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 5.7e-49 198.4 194 55.2
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 5.7e-49 198.4 194 55.2
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 9.6e-49 197.6 139 61.9
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.3e-48 197.2 194 54.6
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 3.7e-48 195.7 132 68.9
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 4.8e-48 195.3 149 61.7
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 1.8e-47 193.4 147 60.5
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 2.9e-45 186.0 143 64.3
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 2.7e-43 179.5 148 58.8
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 1.3e-42 177.2 234 48.3
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 3.9e-42 175.6 149 55.0
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 3.9e-42 175.6 149 55.0
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 9.7e-41 171.0 133 64.7
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 1.3e-40 170.6 203 49.3
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 1.2e-38 164.1 157 54.1
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 5.9e-38 161.8 117 63.2
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 1.0e-37 161.0 148 51.4
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 9.4e-36 154.5 150 52.7
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 1.6e-35 153.7 134 56.0
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 2.1e-35 153.3 90 80.0
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 7.7e-30 134.8 144 46.5
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 8.8e-26 121.3 200 35.0
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 2.6e-25 119.8 115 53.0
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 5.0e-21 105.5 180 34.4
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 6.5e-21 105.1 62 77.4
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 4.0e-18 95.9 135 43.0
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 8.2e-16 88.2 138 32.6
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 6.1e-11 72.0 211 30.3
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 1.0e-10 71.2 122 30.3
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 6.8e-10 68.6 51 64.7
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 1.5e-09 67.4 137 29.9
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 4.8e-08 62.4 206 28.6
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 6.3e-08 62.0 44 63.6
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 2.4e-07 60.1 43 53.5
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 1.2e-06 57.8 39 66.7
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.6e-06 57.4 103 38.8


User provided reference genes

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