Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR084630 Cardamine hirsuta HOM05D005441 ORTHO05D006879 2.3e-41 171.8 86 100.0
AT3G10150 Arabidopsis thaliana HOM05D005441 ORTHO05D006879 5.2e-33 144.1 86 81.4
AL3G21480 Arabidopsis lyrata HOM05D005441 ORTHO05D006879 1.7e-31 139.0 83 80.7
A05p38950 Brassica napus HOM05D005441 ORTHO05D006879 2.8e-31 138.3 83 80.7
BraA05t22686Z Brassica rapa HOM05D005441 ORTHO05D006879 2.8e-31 138.3 83 80.7
Sp3g08430 Schrenkiella parvula HOM05D005441 ORTHO05D006879 3.7e-31 137.9 83 80.7
Thhalv10020902m.g Eutrema salsugineum HOM05D005441 ORTHO05D006879 1.6e-29 132.5 85 78.8
Carub.0003s0930 Capsella rubella HOM05D005441 ORTHO05D006879 1.0e-28 129.8 83 77.1
BcaNung05909 Brassica carinata HOM05D005441 ORTHO05D006879 1.3e-28 129.4 83 80.7
BcaNung05908 Brassica carinata HOM05D005441 ORTHO05D006879 1.7e-28 129.0 83 77.1
BolC5t34452H Brassica oleracea HOM05D005441 ORTHO05D006879 1.7e-28 129.0 83 77.1
Aa31LG3G2690 Aethionema arabicum HOM05D005441 ORTHO05D006879 5.0e-28 127.5 83 75.9
C05p57970 Brassica napus HOM05D005441 ORTHO05D006879 1.9e-27 125.6 83 77.1
THA.LOC104826947 Tarenaya hassleriana HOM05D005441 ORTHO05D006879 8.3e-23 110.2 84 63.1
QL07p005267 Quercus lobata HOM05D005441 ORTHO05D006879 1.0e-20 103.2 83 63.9
MBI19_g22482_MAGBIO Magnolia biondii HOM05D005441 ORTHO05D006879 1.3e-20 102.8 83 62.7
QL05p004537 Quercus lobata HOM05D005441 ORTHO05D006879 1.3e-20 102.8 83 63.9
Migut.J01709 Erythranthe guttata HOM05D005441 ORTHO05D006879 2.2e-20 102.1 83 60.2
Prupe.7G050500 Prunus persica HOM05D005441 ORTHO05D006879 2.2e-20 102.1 83 63.9
QL07p005282 Quercus lobata HOM05D005441 ORTHO05D006879 2.9e-20 101.7 83 62.7
QL07p005564 Quercus lobata HOM05D005441 ORTHO05D006879 2.9e-20 101.7 83 62.7
GSVIVG01033549001 Vitis vinifera HOM05D005441 ORTHO05D006879 2.9e-20 101.7 83 61.4
Cpa.g.sc120.4 Carica papaya HOM05D005441 ORTHO05D006879 5.0e-20 100.9 83 61.4
QL05p004486 Quercus lobata HOM05D005441 ORTHO05D006879 6.5e-20 100.5 83 62.7
CiPaw.09G041900 Carya illinoinensis HOM05D005441 ORTHO05D006879 8.5e-20 100.1 83 63.9
CSS0036594 Camellia sinensis var. sinensis HOM05D005441 ORTHO05D006879 1.1e-19 99.8 83 57.8
FvH4_6g24730 Fragaria vesca HOM05D005441 ORTHO05D006879 1.5e-19 99.4 83 62.7
TAR369G0103 Trochodendron aralioides HOM05D005441 ORTHO05D006879 1.5e-19 99.4 83 62.7
Aqoxy2G00259 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 1.9e-19 99.0 83 61.4
Rhsim03G0030800 Rhododendron simsii HOM05D005441 ORTHO05D006879 1.9e-19 99.0 83 57.8
AUR62024526 Chenopodium quinoa HOM05D005441 ORTHO05D006879 2.5e-19 98.6 83 60.2
Eucgr.A02298 Eucalyptus grandis HOM05D005441 ORTHO05D006879 2.5e-19 98.6 83 56.6
Lj2A389T89 Lonicera japonica HOM05D005441 ORTHO05D006879 2.5e-19 98.6 83 57.8
PGR004G1247 Punica granatum HOM05D005441 ORTHO05D006879 2.5e-19 98.6 83 57.8
Sopen04g008570 Solanum pennellii HOM05D005441 ORTHO05D006879 2.5e-19 98.6 83 57.8
Cfa016756 Carpinus fangiana HOM05D005441 ORTHO05D006879 3.2e-19 98.2 83 61.4
Oeu006920.1 Olea europaea HOM05D005441 ORTHO05D006879 3.2e-19 98.2 83 60.2
GSVIVG01033547001 Vitis vinifera HOM05D005441 ORTHO05D006879 3.2e-19 98.2 83 61.4
Nn7g36437 Nelumbo nucifera HOM05D005441 ORTHO05D006879 4.2e-19 97.8 83 61.4
FAN05G4498 Fragaria x ananassa HOM05D005441 ORTHO05D006879 5.5e-19 97.4 83 61.4
MD12G1085300 Malus domestica HOM05D005441 ORTHO05D006879 5.5e-19 97.4 79 62.0
MD14G1080200 Malus domestica HOM05D005441 ORTHO05D006879 7.2e-19 97.1 83 61.4
FAN09G0607 Fragaria x ananassa HOM05D005441 ORTHO05D006879 9.4e-19 96.7 83 60.2
RcHm_v2.0_Chr3g0484281 Rosa chinensis HOM05D005441 ORTHO05D006879 9.4e-19 96.7 83 60.2
Ciclev10005135m.g Citrus clementina HOM05D005441 ORTHO05D006879 1.2e-18 96.3 83 60.2
Solyc04g016490.4 Solanum lycopersicum HOM05D005441 ORTHO05D006879 1.2e-18 96.3 83 56.6
CAN.G1237.6 Capsicum annuum HOM05D005441 ORTHO05D006879 1.6e-18 95.9 83 55.4
AUR62026118 Chenopodium quinoa HOM05D005441 ORTHO05D006879 1.6e-18 95.9 83 59.0
Eucgr.A02299 Eucalyptus grandis HOM05D005441 ORTHO05D006879 1.6e-18 95.9 83 57.8
arahy.Tifrunner.gnm1.ann1.I76ATH Arachis hypogaea HOM05D005441 ORTHO05D006879 2.1e-18 95.5 83 57.8
Ciclev10007026m.g Citrus clementina HOM05D005441 ORTHO05D006879 2.1e-18 95.5 83 61.4
Hund05910 Selenicereus undatus HOM05D005441 ORTHO05D006879 2.1e-18 95.5 83 56.6
Eucgr.A02300 Eucalyptus grandis HOM05D005441 ORTHO05D006879 3.6e-18 94.7 83 57.8
SalBow6G3742 Salvia bowleyana HOM05D005441 ORTHO05D006879 3.6e-18 94.7 83 55.4
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 4.7e-18 94.4 83 57.8
arahy.Tifrunner.gnm1.ann1.L13VJ0 Arachis hypogaea HOM05D005441 ORTHO05D006879 4.7e-18 94.4 83 57.8
Nitab4.5_0000826g0160 Nicotiana tabacum HOM05D005441 ORTHO05D006879 4.7e-18 94.4 83 55.4
Nitab4.5_0001618g0230 Nicotiana tabacum HOM05D005441 ORTHO05D006879 4.7e-18 94.4 83 54.2
Phvul.007G249800 Phaseolus vulgaris HOM05D005441 ORTHO05D006879 4.7e-18 94.4 83 59.0
Psat6g118360 Pisum sativum HOM05D005441 ORTHO05D006879 4.7e-18 94.4 83 59.0
HPP92_014156 Vanilla planifolia HOM05D005441 ORTHO05D006879 4.7e-18 94.4 83 57.8
HPP92_014176 Vanilla planifolia HOM05D005441 ORTHO05D006879 4.7e-18 94.4 83 57.8
Manes.08G054100 Manihot esculenta HOM05D005441 ORTHO05D006879 6.1e-18 94.0 83 56.6
Thecc.05G145600 Theobroma cacao HOM05D005441 ORTHO05D006879 6.1e-18 94.0 83 54.2
Aqoxy3G01901 Aquilegia oxysepala HOM05D005441 ORTHO05D006879 8.0e-18 93.6 72 66.7
Lj3g0025341 Lotus japonicus HOM05D005441 ORTHO05D006879 8.0e-18 93.6 83 57.8
PGSC0003DMG400012721 Solanum tuberosum HOM05D005441 ORTHO05D006879 1.0e-17 93.2 83 55.4
Dinv39675 Davidia involucrata HOM05D005441 ORTHO05D006879 1.4e-17 92.8 76 61.8
Potri.016G042500 Populus trichocarpa HOM05D005441 ORTHO05D006879 1.4e-17 92.8 83 56.6
vmacro21956 Vaccinium macrocarpon HOM05D005441 ORTHO05D006879 1.4e-17 92.8 83 55.4
COL.COLO4_21308 Corchorus olitorius HOM05D005441 ORTHO05D006879 1.8e-17 92.4 83 55.4
Atru.chr1.1186 Acer truncatum HOM05D005441 ORTHO05D006879 2.3e-17 92.0 83 57.8
Ah.04g151360 Amaranthus hybridus HOM05D005441 ORTHO05D006879 2.3e-17 92.0 83 55.4
Haze_19745 Corylus avellana HOM05D005441 ORTHO05D006879 2.3e-17 92.0 71 66.2
Medtr1g051760 Medicago truncatula HOM05D005441 ORTHO05D006879 2.3e-17 92.0 83 57.8
Peaxi162Scf00130g00934 Petunia axillaris HOM05D005441 ORTHO05D006879 2.3e-17 92.0 83 55.4
Hund19127 Selenicereus undatus HOM05D005441 ORTHO05D006879 2.3e-17 92.0 83 59.0
Sc19g0008470 Simmondsia chinensis HOM05D005441 ORTHO05D006879 4.0e-17 91.3 83 60.2
TPR.G13795 Trifolium pratense HOM05D005441 ORTHO05D006879 4.0e-17 91.3 83 56.6
TWI53G1498 Tripterygium wilfordii HOM05D005441 ORTHO05D006879 4.0e-17 91.3 83 54.2
Ca_14293_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 6.8e-17 90.5 83 56.6
Ca_30943_v3 Cicer arietinum L. HOM05D005441 ORTHO05D006879 6.8e-17 90.5 83 56.6
EL10Ac3g07155 Beta vulgaris HOM05D005441 ORTHO05D006879 8.8e-17 90.1 84 57.1
HanXRQChr14g0444951 Helianthus annuus HOM05D005441 ORTHO05D006879 8.8e-17 90.1 85 55.3
Os01g0941800 Oryza sativa ssp. japonica HOM05D005441 ORTHO05D006879 8.8e-17 90.1 81 58.0
Rhsim03G0030500 Rhododendron simsii HOM05D005441 ORTHO05D006879 8.8e-17 90.1 83 54.2
Cc06_g18310 Coffea canephora HOM05D005441 ORTHO05D006879 1.2e-16 89.7 83 53.0
Glyma.02G192200 Glycine max HOM05D005441 ORTHO05D006879 2.0e-16 89.0 83 54.2
SEGI_23443 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 2.0e-16 89.0 77 58.4
SEGI_29185 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 2.0e-16 89.0 77 58.4
ECA238G2248 Erigeron canadensis HOM05D005441 ORTHO05D006879 2.6e-16 88.6 85 54.1
HanXRQChr14g0444961 Helianthus annuus HOM05D005441 ORTHO05D006879 2.6e-16 88.6 85 56.5
Lsat_1_v5_gn_2_65661 Lactuca sativa HOM05D005441 ORTHO05D006879 2.6e-16 88.6 85 54.1
AUR62028834 Chenopodium quinoa HOM05D005441 ORTHO05D006879 5.7e-16 87.4 77 57.1
QL05p004724 Quercus lobata HOM05D005441 ORTHO05D006879 5.7e-16 87.4 92 53.3
QL10p044609 Quercus lobata HOM05D005441 ORTHO05D006879 5.7e-16 87.4 92 53.3
VMungo0720G1530 Vigna mungo HOM05D005441 ORTHO05D006879 5.7e-16 87.4 83 53.0
EL10Ac6g13153 Beta vulgaris HOM05D005441 ORTHO05D006879 7.5e-16 87.0 83 54.2
Duzib106G1775 Durio zibethinus HOM05D005441 ORTHO05D006879 7.5e-16 87.0 83 53.0
MSTRG.19833 Avicennia marina HOM05D005441 ORTHO05D006879 1.7e-15 85.9 83 54.2
Sed0017425 Sechium edule HOM05D005441 ORTHO05D006879 3.7e-15 84.7 83 53.0
Gorai.006G134400 Gossypium raimondii HOM05D005441 ORTHO05D006879 6.3e-15 84.0 83 50.6
Gohir.D09G116100 Gossypium hirsutum HOM05D005441 ORTHO05D006879 8.3e-15 83.6 83 50.6
MELO3C009811.2 Cucumis melo HOM05D005441 ORTHO05D006879 1.1e-14 83.2 87 51.7
Gohir.A09G119900 Gossypium hirsutum HOM05D005441 ORTHO05D006879 1.1e-14 83.2 83 49.4
PSO210G6175 Papaver somniferum HOM05D005441 ORTHO05D006879 1.4e-14 82.8 84 51.2
ClCG10G015640 Citrullus lanatus HOM05D005441 ORTHO05D006879 1.8e-14 82.4 84 52.4
CsaV3_3G040780 Cucumis sativus L. HOM05D005441 ORTHO05D006879 1.8e-14 82.4 87 50.6
PSO832G1452 Papaver somniferum HOM05D005441 ORTHO05D006879 2.4e-14 82.0 84 50.0
Zm00001eb141530 Zea mays HOM05D005441 ORTHO05D006879 2.4e-14 82.0 88 50.0
SEGI_17185 Sequoiadendron giganteum HOM05D005441 ORTHO05D006879 4.1e-14 81.3 77 54.5
Lalb_Chr02g0156401 Lupinus albus HOM05D005441 ORTHO05D006879 7.0e-14 80.5 83 50.6
ATR0721G128 Amborella trichopoda HOM05D005441 ORTHO05D006879 1.2e-13 79.7 83 50.6
CiPaw.09G041500 Carya illinoinensis HOM05D005441 ORTHO05D006879 1.2e-13 79.7 83 55.4
SMO147G0304 Selaginella moellendorffii HOM05D005441 ORTHO05D006879 4.5e-13 77.8 79 54.4
Mapoly0006s0192 Marchantia polymorpha HOM05D005441 ORTHO05D006879 2.3e-12 75.5 78 50.0
Zm00001eb070880 Zea mays HOM05D005441 ORTHO05D006879 2.3e-12 75.5 82 50.0
Zm00001eb311520 Zea mays HOM05D005441 ORTHO05D006879 8.6e-12 73.6 76 51.3
Pp3c1_39520 Physcomitrium patens HOM05D005441 ORTHO05D006879 2.3e-09 65.5 80 47.5
QL07p005518 Quercus lobata HOM05D005441 ORTHO05D006879 2.6e-08 62.0 84 45.2
unitig_22.g6054 Utricularia gibba HOM05D001412 ORTHO05D002473 3.4e-08 61.6 68 47.1


User provided reference genes

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