Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 8.0e-185 650.2 310 100.0
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 3.1e-173 611.7 310 92.9
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 7.0e-173 610.5 310 92.3
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 5.9e-172 607.4 310 90.6
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 7.7e-172 607.1 310 91.9
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 1.5e-167 592.8 310 88.4
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 4.1e-165 584.7 310 87.1
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 4.1e-165 584.7 310 87.1
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 1.2e-164 583.2 310 87.1
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 1.0e-160 570.1 310 86.8
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 1.4e-157 559.7 306 84.3
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 2.4e-157 558.9 308 85.7
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 3.3e-154 548.5 311 83.6
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 8.1e-153 543.9 309 81.2
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 1.0e-147 526.9 310 80.0
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 2.3e-144 515.8 291 84.5
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 5.1e-139 498.0 304 72.4
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 8.6e-139 497.3 309 71.5
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 4.3e-138 495.0 301 72.8
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 1.2e-137 493.4 307 71.7
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 1.6e-137 493.0 302 72.5
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 1.6e-137 493.0 302 72.5
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 2.8e-137 492.3 303 71.9
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 1.4e-136 490.0 302 71.2
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 4.0e-136 488.4 307 70.0
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 4.0e-136 488.4 307 70.4
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 5.2e-136 488.0 302 71.9
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 1.2e-135 486.9 309 69.6
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 1.5e-135 486.5 304 70.4
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 1.5e-135 486.5 302 72.5
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 7.6e-135 484.2 307 70.0
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 7.6e-135 484.2 303 71.0
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 1.3e-134 483.4 302 71.2
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 2.2e-134 482.6 307 70.0
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 3.8e-134 481.9 307 70.0
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 4.9e-134 481.5 307 70.7
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 2.4e-133 479.2 302 70.2
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 2.4e-133 479.2 304 69.4
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 3.2e-133 478.8 304 69.4
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 3.2e-133 478.8 303 70.3
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 5.4e-133 478.0 302 71.5
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 5.4e-133 478.0 307 68.4
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 1.6e-132 476.5 305 71.1
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 2.1e-132 476.1 302 70.9
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 2.7e-132 475.7 332 65.4
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 6.0e-132 474.6 305 70.8
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 1.0e-131 473.8 303 69.3
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 1.0e-131 473.8 317 67.2
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 1.0e-131 473.8 303 69.6
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.3e-131 473.4 305 69.8
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 1.7e-131 473.0 302 69.2
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 3.0e-131 472.2 303 68.3
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 8.7e-131 470.7 305 71.1
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 8.7e-131 470.7 303 68.6
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 1.1e-130 470.3 302 68.9
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 1.9e-130 469.5 309 70.6
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 2.5e-130 469.2 300 68.3
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 3.3e-130 468.8 307 67.8
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 9.6e-130 467.2 302 67.5
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 1.6e-129 466.5 307 68.4
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 2.1e-129 466.1 305 69.2
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 4.8e-129 464.9 300 69.0
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 1.1e-128 463.8 302 67.9
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 1.8e-128 463.0 302 68.5
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 3.1e-128 462.2 309 69.3
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 6.9e-128 461.1 307 68.1
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 6.9e-128 461.1 313 66.1
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 9.0e-128 460.7 290 70.3
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.5e-127 459.9 302 69.5
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 2.6e-127 459.1 303 67.7
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 3.4e-127 458.8 307 67.1
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 5.8e-127 458.0 303 67.7
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 7.6e-127 457.6 300 67.0
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 7.6e-127 457.6 300 67.0
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 9.9e-127 457.2 300 70.3
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 1.3e-126 456.8 301 69.8
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 1.7e-126 456.4 302 66.9
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 1.7e-126 456.4 302 68.2
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 2.9e-126 455.7 304 67.8
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 4.9e-126 454.9 300 68.0
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 6.4e-126 454.5 300 68.0
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 8.4e-126 454.1 303 68.6
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 1.1e-125 453.8 304 67.8
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 1.9e-125 453.0 300 67.0
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 1.9e-125 453.0 302 68.2
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 4.2e-125 451.8 302 66.9
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 7.1e-125 451.1 302 67.2
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 2.7e-124 449.1 333 61.6
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 6.0e-124 448.0 308 66.2
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.3e-123 446.8 302 67.5
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 1.3e-123 446.8 302 66.9
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 5.6e-122 441.4 307 65.1
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 7.4e-122 441.0 307 66.4
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 2.8e-121 439.1 301 67.1
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 8.1e-121 437.6 346 59.0
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.1e-120 437.2 303 65.7
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 3.1e-120 435.6 311 65.0
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 1.3e-118 430.3 253 79.1
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 2.2e-118 429.5 303 63.7
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 6.4e-118 427.9 307 68.1
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 9.3e-117 424.1 309 63.1
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 2.1e-116 422.9 304 63.5
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 2.3e-115 419.5 301 63.5
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 6.7e-115 417.9 313 68.4
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 1.1e-114 417.2 321 62.3
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 5.6e-114 414.8 301 62.8
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 2.1e-108 396.4 260 69.6
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 4.8e-105 385.2 297 62.0
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 2.4e-104 382.9 305 60.0
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 1.2e-103 380.6 300 59.3
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 3.4e-103 379.0 298 60.1
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.7e-102 376.7 301 59.8
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 1.1e-101 374.0 299 59.9
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 4.6e-100 368.6 250 66.0
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 4.3e-98 362.1 309 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 5.9e-95 351.7 299 56.2
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 3.8e-94 349.0 250 61.6
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 1.4e-93 347.1 301 54.5
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 2.6e-90 336.3 328 53.4
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 5.9e-87 325.1 302 51.0
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 5.0e-86 322.0 233 65.2
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 3.2e-85 319.3 305 50.8
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 3.6e-84 315.8 218 66.1
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 4.4e-82 308.9 196 69.9
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 5.5e-77 292.0 170 79.4
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 2.3e-75 286.6 185 69.7
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 2.4e-72 276.6 180 67.2
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 9.8e-66 254.6 177 65.0
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 2.8e-65 253.1 186 63.4
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 1.0e-62 244.6 169 62.7
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 9.5e-61 238.0 119 92.4
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 6.1e-52 208.8 133 67.7
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 4.9e-49 199.1 130 66.9
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 8.3e-49 198.4 143 61.5
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 2.7e-47 193.4 172 57.0
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 4.0e-43 179.5 277 39.7
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 1.5e-42 177.6 159 60.4
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 1.0e-38 164.9 112 64.3
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 2.8e-36 156.8 129 58.9
Zm00001eb312570 Zea mays HOM05D005095 ORTHO05D006156 1.8e-35 154.1 121 57.0
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 2.3e-30 137.1 115 64.3
VMungo0720G1002 Vigna mungo HOM05D005095 ORTHO05D006156 2.2e-25 120.6 87 58.6
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 4.0e-19 99.8 71 60.6
Prupe.3G199100 Prunus persica HOM05D005095 ORTHO05D006156 1.1e-16 91.7 61 60.7
Zm00001eb198060 Zea mays HOM05D005095 ORTHO05D006156 7.8e-15 85.5 61 60.7
Sabra14G0058200 Salix brachista HOM05D005095 ORTHO05D006156 8.1e-12 75.5 101 45.5
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 3.4e-10 70.1 47 63.8
BcaC06g33893 Brassica carinata HOM05D005095 ORTHO05D092937 2.2e-09 67.4 35 88.6
Pp3c4_390 Physcomitrium patens HOM05D005095 ORTHO05D006156 2.4e-08 63.9 55 49.1
Migut.D02384 Erythranthe guttata HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 37.0
Migut.D02385 Erythranthe guttata HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 37.0
SGA_v2.0_scaffold92G28132 Striga asiatica HOM05D000115 ORTHO05D001535 8.7e-06 55.5 73 37.0


User provided reference genes

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