Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.0e-129 466.8 256 100.0
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 4.5e-117 424.9 255 91.0
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 3.8e-116 421.8 255 91.0
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 1.1e-115 420.2 255 89.8
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.0e-113 413.7 254 89.8
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 8.8e-113 410.6 255 89.4
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 3.3e-112 408.7 256 89.1
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 5.7e-112 407.9 256 88.3
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 9.7e-112 407.1 256 88.7
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 1.7e-111 406.4 256 87.9
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 6.3e-111 404.4 256 87.1
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 5.3e-110 401.4 254 87.8
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 4.0e-105 385.2 254 82.3
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 9.1e-102 374.0 254 77.2
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 5.2e-89 331.6 248 71.4
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 6.3e-87 324.7 250 70.4
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 3.1e-86 322.4 250 68.8
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 4.1e-86 322.0 252 69.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 9.2e-86 320.9 250 69.6
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 1.2e-85 320.5 250 68.4
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.6e-85 320.1 250 69.2
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 4.5e-85 318.5 250 68.0
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.0e-84 317.4 250 66.0
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.3e-84 317.0 250 67.6
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 2.3e-84 316.2 243 68.3
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 8.6e-84 314.3 250 66.8
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 8.6e-84 314.3 249 67.5
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.1e-83 313.9 250 67.2
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.5e-83 312.8 249 66.7
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 4.3e-83 312.0 250 66.8
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 7.3e-83 311.2 250 66.0
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.2e-82 310.5 252 68.3
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.6e-82 310.1 249 67.1
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 2.1e-82 309.7 243 67.9
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 2.8e-82 309.3 251 65.3
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.6e-82 308.9 250 67.6
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.0e-81 307.4 252 66.7
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.0e-81 307.4 251 64.9
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.4e-81 307.0 243 66.3
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 4.0e-81 305.4 252 64.7
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 8.9e-81 304.3 250 67.6
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.5e-80 303.5 250 66.0
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.6e-80 302.8 250 67.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 2.6e-80 302.8 249 65.1
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 9.8e-80 300.8 249 66.3
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 1.3e-79 300.4 251 64.9
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-79 300.4 284 58.1
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 1.7e-79 300.1 250 65.2
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.7e-79 298.9 248 65.3
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.4e-78 297.0 250 65.2
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.9e-78 296.6 248 65.3
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.9e-78 296.6 251 62.9
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.4e-78 296.2 250 65.2
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 3.2e-78 295.8 250 64.8
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.3e-76 290.4 250 64.0
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.3e-76 289.7 248 64.9
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 3.9e-76 288.9 251 61.8
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 5.0e-76 288.5 250 61.2
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.1e-75 287.3 250 61.2
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.5e-75 287.0 250 61.2
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 2.5e-75 286.2 250 61.6
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 2.5e-75 286.2 249 61.4
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 5.6e-75 285.0 252 60.3
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 7.3e-75 284.6 250 60.8
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 7.3e-75 284.6 248 60.9
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.2e-74 283.9 249 60.6
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.8e-73 280.0 249 62.7
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 4.0e-73 278.9 249 61.4
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.2e-72 277.3 234 64.5
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.5e-72 276.9 250 61.2
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.5e-72 276.9 246 63.0
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.5e-72 276.9 246 63.0
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 2.0e-72 276.6 250 62.8
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 2.0e-72 276.6 250 62.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 4.4e-72 275.4 246 62.2
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.8e-72 275.0 251 61.4
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 7.5e-72 274.6 248 60.9
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.3e-71 273.9 248 63.3
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-71 273.9 230 63.9
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.2e-71 273.1 250 61.2
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 2.9e-71 272.7 250 61.2
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 3.7e-71 272.3 249 58.6
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 3.7e-71 272.3 249 58.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 4.9e-71 271.9 248 62.5
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 6.4e-71 271.6 246 62.6
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.9e-70 270.0 241 61.8
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 4.1e-70 268.9 249 57.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 5.4e-70 268.5 249 61.8
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 5.4e-70 268.5 246 58.1
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 7.0e-70 268.1 247 57.9
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 9.2e-70 267.7 250 60.4
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.2e-69 267.3 246 60.6
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.2e-69 267.3 245 60.4
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 7.8e-69 264.6 250 61.2
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 3.0e-68 262.7 250 59.2
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.9e-68 262.3 248 56.9
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 5.1e-68 261.9 248 59.7
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 8.6e-68 261.2 250 60.4
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.1e-67 260.8 248 60.5
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.1e-67 260.8 249 57.0
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.9e-67 260.0 324 49.4
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.5e-67 259.6 249 57.8
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.3e-67 259.2 248 58.9
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 5.6e-67 258.5 248 56.0
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 5.6e-67 258.5 248 58.9
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 9.5e-67 257.7 251 57.8
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.1e-66 256.5 201 67.2
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 2.3e-65 253.1 281 53.0
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 2.3e-65 253.1 249 59.0
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 5.8e-64 248.4 196 68.9
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 5.8e-64 248.4 243 56.0
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 7.5e-64 248.1 250 54.8
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.3e-63 247.3 193 69.4
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 4.9e-63 245.4 245 57.1
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.9e-62 243.4 234 59.8
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.1e-62 242.3 249 55.8
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.2e-61 240.7 230 55.7
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.6e-61 240.4 210 61.0
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 3.9e-60 235.7 249 54.6
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.6e-58 230.3 244 58.2
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 6.8e-57 224.9 203 58.1
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.4e-56 222.2 251 53.4
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 4.4e-56 222.2 247 53.4
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 2.9e-55 219.5 190 60.5
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.1e-53 213.4 248 52.4
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 3.3e-51 206.1 251 47.8
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.4e-48 195.7 160 66.9
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.6e-45 187.2 249 48.6
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.7e-44 183.7 252 46.4
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.4e-41 173.3 147 66.7
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 6.4e-39 165.2 244 43.0
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 7.9e-37 158.3 242 43.4
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 7.9e-37 158.3 120 71.7
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.8e-34 149.8 243 40.7
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.7e-34 149.4 250 41.2
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 9.6e-27 124.8 111 60.4
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 3.7e-26 122.9 120 60.0
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 2.0e-24 117.1 112 59.8
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 4.5e-24 115.9 119 53.8
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 8.4e-23 111.7 80 71.2
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.3e-20 104.4 104 57.7
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.6e-16 90.1 113 47.8
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.4e-09 67.8 44 75.0


User provided reference genes

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