Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.4e-57 226.1 113 100.0
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 7.7e-45 183.7 113 84.1
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 3.8e-44 181.4 114 83.3
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 8.5e-44 180.3 113 83.2
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 2.5e-43 178.7 113 81.4
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 5.7e-40 167.5 113 77.9
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 1.8e-38 162.5 113 75.2
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 1.0e-36 156.8 113 73.5
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 1.3e-36 156.4 112 74.1
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 1.3e-36 156.4 112 74.1
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 2.9e-36 155.2 113 70.8
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 6.5e-36 154.1 109 73.4
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 5.4e-22 107.8 108 58.3
BolC3t16642H Brassica oleracea HOM05D007866 ORTHO05D003871 8.6e-20 100.5 110 54.5
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.2e-15 85.9 130 41.5
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 3.7e-15 85.1 130 41.5
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 4.9e-15 84.7 115 54.8
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 1.1e-14 83.6 130 40.0
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 9.2e-14 80.5 93 48.4
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 1.6e-13 79.7 106 47.2
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 1.6e-13 79.7 106 47.2
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 1.6e-13 79.7 121 41.3
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.7e-13 79.0 108 48.1
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 2.7e-13 79.0 109 42.2
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 6.0e-13 77.8 152 38.8
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 6.0e-13 77.8 152 38.8
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 7.8e-13 77.4 151 38.4
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.0e-12 77.0 121 43.8
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 3.0e-12 75.5 115 43.5
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 3.0e-12 75.5 115 43.5
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 3.0e-12 75.5 95 48.4
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 3.9e-12 75.1 89 48.3
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 5.0e-12 74.7 92 48.9
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 8.6e-12 73.9 89 46.1
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 1.1e-11 73.6 154 35.7
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.9e-11 72.8 118 40.7
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 2.5e-11 72.4 40 77.5
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 3.3e-11 72.0 108 44.4
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 5.6e-11 71.2 91 46.2
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 7.3e-11 70.9 60 63.3
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 7.3e-11 70.9 128 36.7
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 7.3e-11 70.9 91 45.1
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 9.5e-11 70.5 103 46.6
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 1.2e-10 70.1 71 50.7
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 1.2e-10 70.1 101 45.5
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.2e-10 70.1 38 84.2
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 1.6e-10 69.7 59 55.9
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 1.6e-10 69.7 69 53.6
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 2.8e-10 68.9 82 45.1
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 2.8e-10 68.9 56 55.4
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 3.6e-10 68.6 41 65.9
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 6.2e-10 67.8 95 43.2
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 6.2e-10 67.8 53 64.2
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 6.2e-10 67.8 52 59.6
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 8.1e-10 67.4 137 34.3
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.4e-09 66.6 88 46.6
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 4.0e-09 65.1 87 43.7
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 5.2e-09 64.7 47 68.1
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 5.2e-09 64.7 41 73.2
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 6.8e-09 64.3 94 40.4
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 8.9e-09 63.9 40 77.5
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 1.2e-08 63.5 117 36.8
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.2e-08 63.5 51 60.8
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 1.5e-08 63.2 60 55.0
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 1.5e-08 63.2 123 37.4
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.0e-08 62.8 85 40.0
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 2.0e-08 62.8 73 52.1
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 2.6e-08 62.4 50 60.0
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 3.4e-08 62.0 81 43.2
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 3.4e-08 62.0 71 45.1
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 5.8e-08 61.2 36 75.0
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 7.5e-08 60.8 90 41.1
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 7.5e-08 60.8 84 44.0
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 9.9e-08 60.5 72 45.8
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 9.9e-08 60.5 39 74.4
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 9.9e-08 60.5 73 50.7
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.3e-07 60.1 87 41.4
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.3e-07 60.1 53 62.3
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 1.7e-07 59.7 85 41.2
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.7e-07 59.7 77 50.6
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 1.7e-07 59.7 57 54.4
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 1.7e-07 59.7 139 33.1
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 1.7e-07 59.7 69 47.8
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 2.2e-07 59.3 58 53.4
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 2.2e-07 59.3 79 45.6
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 2.2e-07 59.3 60 53.3
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 2.2e-07 59.3 100 40.0
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 2.2e-07 59.3 58 53.4
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 2.9e-07 58.9 53 56.6
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.9e-07 58.9 54 57.4
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 2.9e-07 58.9 84 41.7
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.9e-07 58.9 71 43.7
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 4.9e-07 58.2 54 59.3
SalBow5G2473 Salvia bowleyana HOM05D022546 ORTHO05D350248 4.9e-07 58.2 105 38.1
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 6.4e-07 57.8 87 40.2
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 6.4e-07 57.8 80 48.8
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 8.3e-07 57.4 66 47.0
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 1.1e-06 57.0 103 37.9
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 1.1e-06 57.0 67 46.3
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 1.1e-06 57.0 57 52.6
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.1e-06 57.0 114 37.7
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 1.1e-06 57.0 76 44.7
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.1e-06 57.0 46 60.9
DCAR_012139 Daucus carota HOM05D007866 ORTHO05D003871 1.4e-06 56.6 49 55.1
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 1.4e-06 56.6 45 55.6
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 1.4e-06 56.6 50 62.0
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.4e-06 56.6 54 57.4
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.4e-06 56.6 54 53.7
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 1.9e-06 56.2 65 46.2
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.9e-06 56.2 63 54.0
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.9e-06 56.2 63 54.0
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.9e-06 56.2 111 36.9
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 1.9e-06 56.2 39 71.8
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 1.9e-06 56.2 43 60.5
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.2e-06 55.5 54 53.7
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 3.2e-06 55.5 54 57.4
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 4.1e-06 55.1 72 44.4
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 4.1e-06 55.1 80 38.8
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 5.4e-06 54.7 74 41.9
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 5.4e-06 54.7 54 51.9
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 5.4e-06 54.7 36 72.2
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 5.4e-06 54.7 71 43.7
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 7.1e-06 54.3 83 41.0
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 7.1e-06 54.3 76 43.4
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.1e-06 54.3 111 37.8
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.1e-06 54.3 111 37.8
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 7.1e-06 54.3 44 54.5
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 7.1e-06 54.3 54 51.9


User provided reference genes

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