Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 4.9e-111 404.8 261 100.0
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 1.4e-97 360.1 260 86.2
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 4.5e-96 355.1 260 87.3
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 5.8e-96 354.8 260 87.7
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 1.0e-95 354.0 260 90.0
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.9e-94 349.7 256 88.3
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 5.5e-94 348.2 260 87.7
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 1.9e-91 339.7 259 72.6
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 2.5e-91 339.3 260 85.0
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 2.5e-91 339.3 260 84.6
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 2.5e-91 339.3 260 85.0
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 2.1e-90 336.3 260 84.2
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 5.9e-88 328.2 261 73.9
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 4.2e-86 322.0 261 78.9
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 3.0e-84 315.8 261 78.2
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 9.0e-81 304.3 278 73.4
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 5.7e-67 258.5 260 66.5
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 1.3e-66 257.3 278 58.3
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 4.7e-61 238.8 254 59.1
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 2.0e-59 233.4 262 51.5
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 3.3e-59 232.6 254 63.8
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 6.3e-58 228.4 254 63.4
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 3.5e-56 222.6 262 57.6
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 4.5e-56 222.2 256 58.2
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 7.7e-56 221.5 255 59.2
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.3e-55 220.7 261 52.9
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.7e-55 220.3 264 63.6
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.7e-55 220.3 264 63.6
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.9e-54 216.9 259 59.1
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 4.2e-54 215.7 259 58.7
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.6e-53 213.8 257 49.4
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 1.8e-52 210.3 261 51.7
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 1.2e-51 207.6 194 66.5
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 1.2e-51 207.6 257 54.1
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 5.7e-51 205.3 261 58.6
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 9.8e-51 204.5 261 46.7
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 9.8e-51 204.5 254 54.7
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 2.2e-50 203.4 224 53.6
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 2.8e-50 203.0 260 55.8
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 3.7e-50 202.6 195 56.4
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 6.3e-50 201.8 194 65.5
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 8.3e-50 201.4 261 55.9
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 1.1e-49 201.1 257 60.3
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.4e-49 200.7 260 50.0
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 2.4e-49 199.9 260 50.0
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 4.1e-49 199.1 258 60.5
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.6e-48 197.2 261 54.4
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 4.5e-48 195.7 194 54.1
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 4.5e-48 195.7 261 49.8
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 5.9e-48 195.3 254 58.7
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.7e-48 194.9 206 63.1
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 1.0e-47 194.5 256 54.7
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.7e-47 193.7 210 52.9
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 2.2e-47 193.4 257 59.1
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 5.0e-47 192.2 206 63.1
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 6.5e-47 191.8 200 65.0
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 3.2e-46 189.5 264 49.2
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 4.2e-46 189.1 256 52.3
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 2.7e-45 186.4 254 43.3
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 4.7e-45 185.7 250 46.4
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 8.0e-45 184.9 262 53.4
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 1.8e-44 183.7 208 61.5
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 1.8e-44 183.7 207 62.3
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 3.0e-44 183.0 212 62.3
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 4.0e-44 182.6 226 46.5
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 4.0e-44 182.6 252 47.2
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 5.2e-44 182.2 264 45.5
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 8.8e-44 181.4 261 53.6
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.5e-43 180.6 256 53.1
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.5e-43 180.6 261 55.2
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 2.0e-43 180.3 253 44.7
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 2.6e-43 179.9 192 53.6
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 7.5e-43 178.3 247 49.0
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 1.7e-42 177.2 257 44.7
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 2.2e-42 176.8 261 42.5
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 2.2e-42 176.8 250 54.0
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 2.2e-42 176.8 212 60.4
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 2.8e-42 176.4 208 60.6
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 3.7e-42 176.0 200 60.0
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 3.7e-42 176.0 253 43.9
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 8.3e-42 174.9 224 46.9
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 2.4e-41 173.3 245 42.9
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 2.4e-41 173.3 254 43.7
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 5.4e-41 172.2 140 62.9
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.0e-40 170.2 207 50.2
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 1.0e-39 167.9 264 40.9
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 5.0e-39 165.6 233 53.2
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 8.6e-39 164.9 207 56.0
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.5e-38 164.1 258 54.3
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 4.3e-38 162.5 265 49.4
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.3e-38 162.5 258 53.1
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 4.3e-38 162.5 227 55.5
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 7.3e-38 161.8 143 61.5
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 7.3e-38 161.8 239 52.3
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 1.6e-37 160.6 257 52.1
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 2.1e-37 160.2 253 50.6
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 2.1e-37 160.2 253 51.4
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 6.1e-37 158.7 205 56.6
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 6.1e-37 158.7 244 51.6
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 1.0e-36 157.9 210 50.0
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 1.8e-36 157.1 261 47.1
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 2.3e-36 156.8 212 50.0
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 3.0e-36 156.4 205 44.9
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 8.9e-36 154.8 157 54.1
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.3e-34 151.0 257 48.6
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 3.7e-34 149.4 205 42.9
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 3.7e-34 149.4 257 45.9
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 1.1e-33 147.9 261 48.3
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 7.0e-33 145.2 129 58.1
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 4.6e-32 142.5 196 45.4
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 5.9e-32 142.1 196 45.4
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 6.6e-31 138.7 260 51.9
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 1.1e-30 137.9 125 56.8
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.8e-28 130.6 146 51.4
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 2.3e-28 130.2 192 52.6
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.2e-27 127.9 166 45.8
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 4.4e-27 125.9 193 53.9
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.7e-26 124.0 258 38.4
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.2e-26 123.6 181 50.3
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.4e-25 120.2 140 49.3
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 9.5e-22 108.2 211 32.7
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 7.5e-19 98.6 203 30.5
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 2.2e-18 97.1 209 30.6
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 4.9e-18 95.9 205 31.7
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.1e-17 94.7 207 29.5
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 3.9e-15 86.3 97 47.4
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 6.6e-15 85.5 181 30.4
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.9e-14 84.0 83 54.2
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 4.7e-13 79.3 79 48.1
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 3.4e-11 73.2 213 29.1
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.4e-09 67.8 244 27.0
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 4.6e-08 62.8 94 40.4
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.1e-07 59.3 212 27.4


User provided reference genes

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