Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 8.0e-283 976.5 510 100.0
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 1.0e-277 959.5 510 98.0
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.9e-276 955.3 510 97.6
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 4.3e-276 954.1 510 97.5
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 8.0e-275 949.9 510 95.9
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 3.0e-274 948.0 510 96.7
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 5.2e-274 947.2 510 95.9
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 6.8e-274 946.8 510 96.9
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.5e-273 945.7 510 95.5
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 2.0e-273 945.3 510 95.3
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.3e-272 942.6 510 95.1
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.4e-271 939.1 510 95.5
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 3.2e-271 937.9 510 95.7
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 4.1e-271 937.6 510 95.5
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 7.0e-271 936.8 510 95.5
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 4.6e-270 934.1 510 95.1
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 8.6e-269 929.9 510 93.1
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 1.3e-261 906.0 494 95.7
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 2.3e-261 905.2 510 92.9
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 3.0e-261 904.8 510 92.7
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 3.0e-261 904.8 510 92.7
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 8.6e-261 903.3 510 92.5
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 2.2e-256 888.6 494 93.1
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 3.2e-255 884.8 511 87.3
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 3.2e-255 884.8 511 87.9
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 4.1e-255 884.4 510 88.0
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 1.6e-254 882.5 510 87.5
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 4.6e-254 880.9 510 87.5
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 6.0e-254 880.6 510 87.5
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 6.0e-254 880.6 510 87.6
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.0e-253 879.8 510 88.4
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 3.0e-253 878.2 510 87.6
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 3.0e-253 878.2 510 86.9
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 5.1e-253 877.5 510 86.3
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 6.6e-253 877.1 510 86.1
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 8.6e-253 876.7 511 86.5
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 8.6e-253 876.7 510 87.5
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 1.1e-252 876.3 511 86.7
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 1.5e-252 875.9 510 87.6
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.9e-252 875.5 510 86.9
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 2.5e-252 875.2 511 86.5
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 5.6e-252 874.0 510 87.1
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 1.2e-251 872.8 511 86.9
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 8.1e-251 870.2 510 86.1
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.1e-250 869.8 510 86.7
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 2.3e-250 868.6 510 87.3
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 4.0e-250 867.8 510 86.3
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 4.0e-250 867.8 510 86.3
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 4.0e-250 867.8 510 86.3
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 8.9e-250 866.7 510 86.3
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 1.5e-249 865.9 510 86.5
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 2.0e-249 865.5 511 86.5
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 3.4e-249 864.8 511 86.5
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 7.6e-249 863.6 510 86.3
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 1.3e-248 862.8 510 84.9
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 3.8e-248 861.3 510 85.5
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 6.4e-248 860.5 510 85.7
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 6.4e-248 860.5 510 85.1
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 1.1e-247 859.8 510 85.3
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.9e-247 859.0 510 85.9
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.9e-247 859.0 510 84.9
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 2.4e-247 858.6 510 86.3
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 2.4e-247 858.6 510 85.1
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 5.4e-247 857.4 510 85.1
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 7.1e-247 857.1 510 84.7
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 9.2e-247 856.7 510 84.7
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 9.2e-247 856.7 510 86.1
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 9.2e-247 856.7 510 84.5
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 2.7e-246 855.1 510 85.9
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 2.7e-246 855.1 510 85.3
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 2.7e-246 855.1 510 84.5
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 3.5e-246 854.7 510 84.9
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 4.6e-246 854.4 510 85.1
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.0e-246 854.0 512 84.8
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.3e-245 852.8 510 84.9
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.7e-245 852.4 511 84.3
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 2.3e-245 852.0 509 84.7
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 3.0e-245 851.7 510 85.7
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 6.6e-245 850.5 510 85.5
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.1e-244 849.7 510 84.9
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 1.9e-244 849.0 510 84.5
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 7.3e-244 847.0 510 84.3
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 1.6e-243 845.9 510 83.7
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 8.1e-243 843.6 510 83.1
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.4e-242 842.8 511 83.8
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 1.4e-242 842.8 510 85.1
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 2.4e-242 842.0 527 82.4
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 5.2e-242 840.9 511 83.6
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 6.9e-242 840.5 510 83.9
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 3.4e-241 838.2 549 79.1
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 4.4e-241 837.8 510 83.3
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 7.6e-241 837.0 511 83.8
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 9.9e-241 836.6 511 83.4
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 9.9e-241 836.6 494 86.6
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 1.7e-240 835.9 512 83.8
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 8.4e-240 833.6 510 83.5
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 1.1e-239 833.2 511 83.4
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 1.4e-239 832.8 510 82.5
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 1.4e-239 832.8 510 82.9
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 7.1e-239 830.5 510 82.5
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.6e-238 829.3 510 82.0
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 2.1e-238 828.9 511 82.2
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 2.7e-238 828.6 512 83.4
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 3.5e-238 828.2 511 82.6
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 1.3e-237 826.2 510 81.8
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.3e-237 826.2 510 82.2
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.3e-237 826.2 510 81.8
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.3e-237 826.2 510 81.8
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 1.7e-237 825.9 494 86.6
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 1.1e-236 823.2 472 89.0
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 8.1e-235 817.0 505 83.0
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 1.8e-234 815.8 441 95.9
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 5.3e-234 814.3 511 81.0
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 9.0e-234 813.5 524 80.0
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 2.2e-232 808.9 479 84.3
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 1.1e-231 806.6 556 77.2
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 4.2e-231 804.7 494 84.6
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 4.3e-228 794.7 494 81.8
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 4.8e-227 791.2 511 79.3
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 3.1e-226 788.5 547 75.5
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 2.2e-224 782.3 511 77.1
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 4.9e-224 781.2 512 78.9
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.6e-222 776.2 524 78.2
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.6e-222 776.2 524 78.2
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 1.0e-221 773.5 511 78.5
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.1e-220 770.0 511 75.7
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 1.9e-220 769.2 510 78.8
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 7.4e-220 767.3 512 78.3
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 9.6e-220 766.9 510 78.6
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 2.3e-205 719.2 472 80.7
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 5.1e-205 718.0 511 74.4
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 1.3e-200 703.4 413 86.7
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 2.2e-200 702.6 503 72.8
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.7e-192 676.4 510 70.2
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 7.4e-188 661.0 514 63.4
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.2e-185 653.7 503 67.0
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 1.0e-181 640.6 375 87.2
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 2.2e-179 632.9 468 70.1
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 3.2e-175 619.0 514 59.9
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 5.4e-170 601.7 365 84.7
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 3.8e-168 595.5 364 83.5
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 5.5e-167 591.7 522 59.6
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 7.2e-167 591.3 379 79.7
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 5.7e-164 581.6 515 57.7
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.8e-163 579.3 494 59.3
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 1.6e-158 563.5 504 62.9
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.7e-155 553.5 345 83.5
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 2.9e-155 552.7 325 88.0
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 3.2e-154 549.3 499 54.5
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.2e-146 522.7 457 65.2
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 5.4e-146 521.9 307 88.3
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.7e-136 490.3 284 88.7
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 3.5e-129 466.1 383 61.4
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.4e-116 422.9 254 83.5
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 4.5e-116 422.5 508 46.9
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 5.6e-111 405.6 245 84.9
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 2.2e-107 393.7 486 45.1
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.6e-105 386.0 386 54.4
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 2.1e-102 377.1 267 74.2
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 5.7e-95 352.4 513 38.0
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.7e-75 287.7 199 76.4
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.8e-70 270.4 343 45.8
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 1.0e-67 261.9 503 37.8
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 4.5e-60 236.5 142 84.5
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 2.7e-57 227.3 365 42.2
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.0e-56 225.3 289 46.0
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 9.8e-47 192.2 117 78.6
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.6e-44 184.9 206 52.9
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.5e-42 175.6 197 50.8
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 5.2e-40 169.9 171 60.8
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 1.6e-33 148.3 106 72.6
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.7e-30 138.3 119 58.8
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 2.9e-30 137.5 82 89.0
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 3.9e-19 100.5 121 55.4
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 5.1e-11 73.6 67 56.7
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 5.6e-10 70.1 39 84.6
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 8.1e-09 66.2 37 83.8


User provided reference genes

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