Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR082570 Cardamine hirsuta HOM05D000848 ORTHO05D033442 1.7e-41 172.2 82 100.0
A02p32130 Brassica napus HOM05D000848 ORTHO05D020100 3.3e-21 104.8 62 74.2
A06p43830 Brassica napus HOM05D000848 ORTHO05D003342 3.7e-20 101.3 62 71.0
Carub.0002s1565 Capsella rubella HOM05D000848 ORTHO05D003342 3.7e-20 101.3 88 56.8
AL6G40690 Arabidopsis lyrata HOM05D000848 ORTHO05D003342 1.8e-14 82.4 54 64.8
Carub.0007s3131 Capsella rubella HOM05D000848 ORTHO05D003342 3.0e-14 81.6 60 61.7
C09p22620 Brassica napus HOM05D000848 ORTHO05D003342 5.1e-14 80.9 62 56.5
BcaC01g06423 Brassica carinata HOM05D000848 ORTHO05D020139 1.9e-13 79.0 95 47.4
BolC1t02289H Brassica oleracea HOM05D000848 ORTHO05D003342 3.3e-13 78.2 43 81.4
BolC2t11612H Brassica oleracea HOM05D000848 ORTHO05D003342 3.3e-13 78.2 62 58.1
A09p10540 Brassica napus HOM05D000848 ORTHO05D003342 4.3e-13 77.8 50 64.0
C01p00830 Brassica napus HOM05D000848 ORTHO05D021910 1.6e-12 75.9 62 54.8
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 1.6e-12 75.9 80 48.8
BolC3t20476H Brassica oleracea HOM05D000848 ORTHO05D003342 1.6e-12 75.9 77 50.6
BolC8t52060H Brassica oleracea HOM05D000848 ORTHO05D003342 1.6e-12 75.9 62 54.8
Thhalv10029211m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 1.6e-12 75.9 72 50.0
C09p71300 Brassica napus HOM05D000848 ORTHO05D033378 3.7e-12 74.7 73 47.9
BolC3t18271H Brassica oleracea HOM05D000848 ORTHO05D022013 3.7e-12 74.7 62 54.8
BolC9t59892H Brassica oleracea HOM05D000848 ORTHO05D033378 3.7e-12 74.7 73 47.9
C01p47370 Brassica napus HOM05D000848 ORTHO05D003342 4.8e-12 74.3 62 53.2
C03p85290 Brassica napus HOM05D000848 ORTHO05D003342 4.8e-12 74.3 62 54.8
C05p03590 Brassica napus HOM05D000848 ORTHO05D023963 4.8e-12 74.3 62 53.2
C07p34470 Brassica napus HOM05D000848 ORTHO05D003342 4.8e-12 74.3 62 53.2
BolC7t43979H Brassica oleracea HOM05D000848 ORTHO05D003342 4.8e-12 74.3 62 53.2
BolC8t51574H Brassica oleracea HOM05D000848 ORTHO05D003342 4.8e-12 74.3 62 54.8
Thhalv10017861m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 4.8e-12 74.3 59 54.2
BcaB02g09790 Brassica carinata HOM05D000848 ORTHO05D003342 6.2e-12 73.9 70 52.9
C05p18240 Brassica napus HOM05D000848 ORTHO05D027490 6.2e-12 73.9 60 56.7
C08p44850 Brassica napus HOM05D000848 ORTHO05D027490 6.2e-12 73.9 60 56.7
BolC8t52031H Brassica oleracea HOM05D000848 ORTHO05D027490 6.2e-12 73.9 60 56.7
BolC9t53065H Brassica oleracea HOM05D000848 ORTHO05D018552 6.2e-12 73.9 62 51.6
BcaC05g30229 Brassica carinata HOM05D000848 ORTHO05D003342 1.1e-11 73.2 63 54.0
BolC5t30476H Brassica oleracea HOM05D000848 ORTHO05D021747 1.1e-11 73.2 62 54.8
Carub.0001s1624 Capsella rubella HOM05D000848 ORTHO05D003342 1.1e-11 73.2 67 56.7
C03p55270 Brassica napus HOM05D000848 ORTHO05D018749 1.4e-11 72.8 62 51.6
C03p75180 Brassica napus HOM05D000848 ORTHO05D033442 1.4e-11 72.8 73 46.6
BolC3t17799H Brassica oleracea HOM05D000848 ORTHO05D018749 1.4e-11 72.8 62 51.6
BcaB02g08198 Brassica carinata HOM05D000848 ORTHO05D003342 1.8e-11 72.4 70 48.6
BcaC03g13929 Brassica carinata HOM05D000848 ORTHO05D024289 2.4e-11 72.0 62 53.2
C07p54300 Brassica napus HOM05D001263 ORTHO05D001120 2.4e-11 72.0 62 51.6
C08p40030 Brassica napus HOM05D000848 ORTHO05D003342 2.4e-11 72.0 59 54.2
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 3.1e-11 71.6 62 53.2
BolC5t29801H Brassica oleracea HOM05D000848 ORTHO05D018552 3.1e-11 71.6 62 51.6
BolC8t49965H Brassica oleracea HOM05D000848 ORTHO05D014511 3.1e-11 71.6 62 53.2
C04p12480 Brassica napus HOM05D000848 ORTHO05D018552 4.0e-11 71.2 62 51.6
C07p58790 Brassica napus HOM05D000848 ORTHO05D003342 4.0e-11 71.2 62 53.2
BolC4t22896H Brassica oleracea HOM05D000848 ORTHO05D018552 4.0e-11 71.2 62 51.6
BolC7t46327H Brassica oleracea HOM05D000848 ORTHO05D003342 4.0e-11 71.2 62 53.2
BolC8t51083H Brassica oleracea HOM05D000848 ORTHO05D003342 4.0e-11 71.2 62 54.8
Thhalv10029505m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 4.0e-11 71.2 50 62.0
C01p28500 Brassica napus HOM05D000848 ORTHO05D003342 5.3e-11 70.9 73 45.2
BcaC06g30921 Brassica carinata HOM05D000848 ORTHO05D018560 6.9e-11 70.5 49 59.2
BcaC09g49472 Brassica carinata HOM05D000848 ORTHO05D003342 9.0e-11 70.1 60 56.7
A07p34870 Brassica napus HOM05D000848 ORTHO05D003342 9.0e-11 70.1 73 47.9
BraA03t13211Z Brassica rapa HOM05D000848 ORTHO05D022013 9.0e-11 70.1 58 55.2
BraA06t24860Z Brassica rapa HOM05D000848 ORTHO05D032124 9.0e-11 70.1 73 47.9
C01p38710 Brassica napus HOM05D000848 ORTHO05D003342 1.5e-10 69.3 62 50.0
BolC7t45916H Brassica oleracea HOM05D001263 ORTHO05D001120 2.0e-10 68.9 62 50.0
BcaB06g25358 Brassica carinata HOM05D000848 ORTHO05D003342 3.4e-10 68.2 63 54.0
BcaC05g25837 Brassica carinata HOM05D000848 ORTHO05D031797 3.4e-10 68.2 62 48.4
C01p15420 Brassica napus HOM05D000848 ORTHO05D003342 3.4e-10 68.2 68 50.0
BolC1t01496H Brassica oleracea HOM05D000848 ORTHO05D003342 4.5e-10 67.8 69 47.8
Thhalv10016371m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 5.8e-10 67.4 96 43.8
BolC3t15415H Brassica oleracea HOM05D000848 ORTHO05D003342 7.6e-10 67.0 62 48.4
CARHR183910 Cardamine hirsuta HOM05D000848 ORTHO05D000007 7.6e-10 67.0 58 53.4
C04p56700 Brassica napus HOM05D000848 ORTHO05D003342 1.0e-09 66.6 61 52.5
BolC2t07668H Brassica oleracea HOM05D000848 ORTHO05D003342 1.0e-09 66.6 47 66.0
BolC4t27202H Brassica oleracea HOM05D000848 ORTHO05D003342 1.0e-09 66.6 61 52.5
C04p01170 Brassica napus HOM05D000848 ORTHO05D003342 2.2e-09 65.5 62 48.4
C06p21550 Brassica napus HOM05D000848 ORTHO05D022013 2.2e-09 65.5 62 48.4
BcaC02g08753 Brassica carinata HOM05D016070 ORTHO05D003342 2.9e-09 65.1 61 52.5
BraA05t20700Z Brassica rapa HOM05D000848 ORTHO05D024289 2.9e-09 65.1 50 62.0
BolC1t02868H Brassica oleracea HOM05D000848 ORTHO05D033442 6.5e-09 63.9 73 43.8
C06p39980 Brassica napus HOM05D000848 ORTHO05D015498 1.4e-08 62.8 67 49.3
C04p18190 Brassica napus HOM05D000253 ORTHO05D000149 4.2e-08 61.2 59 49.2
BolC3t20213H Brassica oleracea HOM05D000005 ORTHO05D003342 1.2e-07 59.7 62 46.8
A03p40530 Brassica napus HOM05D000848 ORTHO05D022013 3.5e-07 58.2 51 51.0
BolC3t18183H Brassica oleracea HOM05D000848 ORTHO05D021665 1.8e-06 55.8 41 58.5
A04p29750 Brassica napus HOM05D000848 ORTHO05D022013 2.3e-06 55.5 46 54.3
A04p17460 Brassica napus HOM05D000848 ORTHO05D003342 3.0e-06 55.1 41 58.5
BraA04t17369Z Brassica rapa HOM05D000848 ORTHO05D016609 3.0e-06 55.1 41 58.5
Thhalv10026798m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 3.0e-06 55.1 47 55.3
Thhalv10019718m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 3.9e-06 54.7 44 56.8
A09p62030 Brassica napus HOM05D000848 ORTHO05D003342 6.7e-06 53.9 48 50.0
Thhalv10005348m.g Eutrema salsugineum HOM05D000848 ORTHO05D003342 6.7e-06 53.9 45 57.8
BcaC03g14338 Brassica carinata HOM05D008189 ORTHO05D027657 8.7e-06 53.5 31 67.7


User provided reference genes

Program Settings