Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 1.3e-288 995.7 505 100.0
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 6.5e-269 930.2 505 93.3
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 2.0e-265 918.7 505 92.1
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 1.8e-263 912.1 506 92.5
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 3.5e-262 907.9 510 91.6
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 2.2e-256 888.6 511 89.6
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 1.0e-253 879.8 504 88.1
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 2.9e-232 808.5 508 83.9
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 2.9e-232 808.5 513 84.0
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 3.2e-231 805.1 510 84.1
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.1e-227 792.3 504 80.8
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 1.3e-224 783.1 511 83.0
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 3.2e-223 778.5 511 82.6
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 1.6e-222 776.2 513 81.9
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 9.5e-220 766.9 509 81.5
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 2.1e-219 765.8 509 81.3
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.1e-215 753.4 507 76.9
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 2.1e-214 749.2 507 77.3
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 5.6e-212 741.1 507 76.3
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.2e-211 740.0 507 76.1
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 6.2e-211 737.6 509 76.4
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 4.0e-210 734.9 507 75.7
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 5.1e-205 718.0 506 73.3
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 6.9e-202 707.6 507 72.8
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 4.6e-198 694.9 517 71.4
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 6.0e-198 694.5 505 71.5
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 3.9e-197 691.8 516 72.1
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 5.1e-197 691.4 511 72.6
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 5.1e-197 691.4 505 71.5
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 2.8e-195 685.6 511 72.0
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.8e-195 684.9 508 69.9
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 6.9e-194 681.0 508 71.3
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 9.0e-194 680.6 508 70.5
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.5e-193 679.9 508 70.1
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 4.5e-193 678.3 509 71.5
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 4.5e-193 678.3 504 70.6
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.7e-192 676.4 506 71.1
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 7.9e-190 667.5 510 69.8
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 3.9e-189 665.2 504 69.6
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 5.3e-186 654.8 504 68.5
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 2.9e-184 649.0 512 68.4
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 1.1e-183 647.1 509 68.4
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 1.4e-183 646.7 505 67.5
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.1e-183 644.4 509 69.2
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.6e-182 643.3 513 66.1
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 3.5e-182 642.1 510 67.5
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 3.5e-182 642.1 510 68.2
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.5e-182 642.1 510 68.2
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.9e-182 641.0 510 68.2
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 1.0e-181 640.6 511 68.1
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 5.1e-181 638.3 506 67.0
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 6.7e-181 637.9 509 66.8
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 1.1e-180 637.1 509 67.2
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.5e-180 636.7 510 66.7
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.9e-180 636.3 505 67.1
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 3.3e-180 635.6 509 67.2
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 3.3e-180 635.6 498 67.9
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 7.4e-180 634.4 513 66.1
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 2.1e-179 632.9 507 65.7
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 2.1e-179 632.9 507 66.1
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 1.1e-178 630.6 511 67.1
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 2.4e-178 629.4 505 66.3
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 3.1e-178 629.0 508 66.9
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 9.0e-178 627.5 512 67.6
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 9.0e-178 627.5 507 66.9
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 5.9e-177 624.8 506 67.8
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.3e-176 623.6 505 66.5
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 2.2e-176 622.9 529 66.0
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 2.2e-176 622.9 507 66.3
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 2.9e-176 622.5 508 65.9
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 3.8e-176 622.1 507 66.5
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 6.5e-176 621.3 510 65.9
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 2.5e-175 619.4 511 66.9
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 7.2e-175 617.8 512 66.0
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 7.2e-175 617.8 508 65.2
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 3.9e-173 612.1 516 64.9
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.1e-172 610.5 509 66.4
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 1.5e-172 610.1 507 66.3
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 2.8e-171 605.9 508 65.4
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.7e-171 605.5 510 65.5
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.8e-170 603.2 517 63.2
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.1e-170 602.4 508 65.0
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 4.5e-169 598.6 512 65.8
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 1.1e-167 594.0 506 64.8
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.4e-167 593.6 515 62.7
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 4.2e-167 592.0 462 68.4
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 1.6e-166 590.1 527 62.8
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.1e-166 589.7 508 65.0
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 3.9e-165 585.5 512 63.3
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 4.3e-164 582.0 520 61.7
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 7.4e-164 581.3 521 62.8
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 8.2e-163 577.8 519 63.0
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 6.9e-162 574.7 513 63.0
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 1.2e-161 573.9 497 62.4
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 8.5e-160 567.8 509 61.3
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 8.8e-157 557.8 469 63.1
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.7e-155 553.5 493 60.9
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 3.7e-155 552.4 519 59.7
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 1.1e-154 550.8 490 61.0
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 6.7e-149 531.6 518 57.5
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 9.7e-148 527.7 538 56.9
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 1.8e-146 523.5 534 56.2
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 1.5e-143 513.8 451 63.0
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 7.2e-143 511.5 505 58.6
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 2.0e-140 503.4 516 56.0
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 3.2e-135 486.1 512 57.0
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 1.6e-134 483.8 515 56.3
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 4.7e-134 482.3 515 55.9
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 7.3e-127 458.4 483 55.3
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 8.0e-126 454.9 519 51.8
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 1.2e-121 441.0 499 52.5
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 7.5e-116 421.8 500 50.6
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 3.2e-114 416.4 524 49.4
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 1.6e-113 414.1 515 49.3
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 6.6e-112 408.7 306 67.6
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 2.4e-106 390.2 290 69.7
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 6.8e-101 372.1 522 46.6
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 6.6e-88 328.9 576 42.0
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 6.9e-85 318.9 506 44.5
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 2.0e-60 237.7 285 49.1
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 2.9e-51 207.2 342 40.6
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 1.4e-50 204.9 202 57.4
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 4.4e-39 166.8 279 40.1
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 8.0e-25 119.4 99 66.7
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.5e-23 115.2 536 26.5
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 4.8e-22 110.2 454 26.7
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.1e-21 109.0 81 65.4
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 5.0e-19 100.1 71 73.2
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 4.9e-14 83.6 74 52.7
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 8.3e-14 82.8 56 69.6
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.7e-11 75.1 63 57.1
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 6.6e-11 73.2 183 31.1
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.4e-07 60.8 71 56.3
PRCOL_00002377 Prasinoderma coloniale HOM05D005917 ORTHO05D333437 3.7e-06 57.4 420 25.0


User provided reference genes

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