Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR081750 Cardamine hirsuta HOM05D007399 ORTHO05D009341 1.5e-114 416.4 232 100.0
AT3G07150 Arabidopsis thaliana HOM05D007399 ORTHO05D009341 1.8e-80 303.1 232 69.0
AL3G18400 Arabidopsis lyrata HOM05D007399 ORTHO05D009341 1.4e-72 276.9 232 65.1
Carub.0003s0667 Capsella rubella HOM05D007399 ORTHO05D009341 5.2e-72 275.0 233 66.1
Sp3g06090 Schrenkiella parvula HOM05D007399 ORTHO05D009341 3.6e-65 252.3 230 61.3
Thhalv10022223m.g Eutrema salsugineum HOM05D007399 ORTHO05D009341 1.8e-64 250.0 160 77.5
A05p41060 Brassica napus HOM05D007399 ORTHO05D009341 2.6e-63 246.1 235 59.1
C05p60230 Brassica napus HOM05D007399 ORTHO05D009341 2.6e-63 246.1 233 60.5
BraA05t22833Z Brassica rapa HOM05D007399 ORTHO05D009341 4.4e-63 245.4 235 59.1
BcaC05g29843 Brassica carinata HOM05D007399 ORTHO05D009341 9.9e-63 244.2 232 59.5
BolC5t34673H Brassica oleracea HOM05D007399 ORTHO05D009341 1.7e-62 243.4 233 59.7
BcaC05g29751 Brassica carinata HOM05D007399 ORTHO05D009341 4.6e-60 235.3 233 57.9
Aa31LG5G17710 Aethionema arabicum HOM05D007399 ORTHO05D009341 2.1e-49 199.9 242 51.2
THA.LOC104802666 Tarenaya hassleriana HOM05D007399 ORTHO05D009341 2.9e-46 189.5 235 48.1
Cc01_g16850 Coffea canephora HOM05D007399 ORTHO05D009341 7.1e-37 158.3 119 62.2
Duzib133G1013 Durio zibethinus HOM05D007399 ORTHO05D009341 9.3e-37 157.9 145 54.5
QL09p052198 Quercus lobata HOM05D007399 ORTHO05D009341 1.6e-36 157.1 171 48.0
Thecc.01G222700 Theobroma cacao HOM05D007399 ORTHO05D009341 2.3e-35 153.3 114 63.2
COL.COLO4_15647 Corchorus olitorius HOM05D007399 ORTHO05D009341 6.7e-35 151.8 173 50.3
Cpa.g.sc8.134 Carica papaya HOM05D007399 ORTHO05D009341 1.9e-34 150.2 153 49.0
Ah.08g214480 Amaranthus hybridus HOM05D007399 ORTHO05D009341 5.6e-34 148.7 126 58.7
Manes.13G046300 Manihot esculenta HOM05D007399 ORTHO05D009341 5.6e-34 148.7 184 47.3
Nn1g07919 Nelumbo nucifera HOM05D007399 ORTHO05D009341 7.4e-34 148.3 127 57.5
Oeu037382.1 Olea europaea HOM05D007399 ORTHO05D009341 7.4e-34 148.3 180 45.0
Dinv19187 Davidia involucrata HOM05D007399 ORTHO05D009341 1.3e-33 147.5 103 66.0
Phvul.010G020400 Phaseolus vulgaris HOM05D007399 ORTHO05D009341 2.8e-33 146.4 177 45.8
Atru.chr6.1505 Acer truncatum HOM05D007399 ORTHO05D009341 3.7e-33 146.0 99 65.7
Haze_24850 Corylus avellana HOM05D007399 ORTHO05D009341 3.7e-33 146.0 169 49.7
Ciclev10022115m.g Citrus clementina HOM05D007399 ORTHO05D009341 6.2e-33 145.2 139 53.2
Prupe.8G200700 Prunus persica HOM05D007399 ORTHO05D009341 1.4e-32 144.1 171 48.5
Hund05568 Selenicereus undatus HOM05D007399 ORTHO05D009341 1.4e-32 144.1 102 63.7
Peaxi162Scf00398g00810 Petunia axillaris HOM05D007399 ORTHO05D009341 5.3e-32 142.1 167 46.7
Gohir.A11G139200 Gossypium hirsutum HOM05D007399 ORTHO05D009341 1.2e-31 141.0 132 53.0
Oeu037384.1 Olea europaea HOM05D007399 ORTHO05D009341 3.4e-31 139.4 100 63.0
Potri.002G244400 Populus trichocarpa HOM05D007399 ORTHO05D009341 3.4e-31 139.4 101 64.4
ECA248G2789 Erigeron canadensis HOM05D007399 ORTHO05D009341 4.5e-31 139.0 160 46.9
QL09p053062 Quercus lobata HOM05D007399 ORTHO05D009341 5.8e-31 138.7 139 48.9
VMungo0331G1622 Vigna mungo HOM05D007399 ORTHO05D009341 5.8e-31 138.7 143 50.3
Nitab4.5_0000045g0320 Nicotiana tabacum HOM05D007399 ORTHO05D009341 7.6e-31 138.3 109 57.8
Sabra02G0185900 Salix brachista HOM05D007399 ORTHO05D009341 7.6e-31 138.3 150 46.7
Nitab4.5_0000345g0070 Nicotiana tabacum HOM05D007399 ORTHO05D009341 1.3e-30 137.5 172 45.3
CiPaw.03G147600 Carya illinoinensis HOM05D007399 ORTHO05D009341 1.7e-30 137.1 164 48.2
QL09p053453 Quercus lobata HOM05D007399 ORTHO05D009341 3.8e-30 136.0 171 44.4
Rhsim01G0254900 Rhododendron simsii HOM05D007399 ORTHO05D009341 3.8e-30 136.0 98 61.2
Gohir.D11G145400 Gossypium hirsutum HOM05D007399 ORTHO05D009341 6.5e-30 135.2 132 50.8
Glyma.16G101000 Glycine max HOM05D007399 ORTHO05D009341 1.1e-29 134.4 160 45.0
TWI18G0746 Tripterygium wilfordii HOM05D007399 ORTHO05D009341 1.1e-29 134.4 101 61.4
TAR362G0473 Trochodendron aralioides HOM05D007399 ORTHO05D009341 1.4e-29 134.0 105 59.0
Lalb_Chr12g0209951 Lupinus albus HOM05D007399 ORTHO05D009341 1.9e-29 133.7 176 42.0
arahy.Tifrunner.gnm1.ann1.5JJB2W Arachis hypogaea HOM05D007399 ORTHO05D009341 2.5e-29 133.3 102 58.8
Psat4g199960 Pisum sativum HOM05D007399 ORTHO05D009341 2.5e-29 133.3 178 44.9
arahy.Tifrunner.gnm1.ann1.YE6SLX Arachis hypogaea HOM05D007399 ORTHO05D009341 3.2e-29 132.9 102 58.8
CSS0020487 Camellia sinensis var. sinensis HOM05D007399 ORTHO05D009341 4.2e-29 132.5 104 56.7
HanXRQChr01g0015211 Helianthus annuus HOM05D007399 ORTHO05D009341 4.2e-29 132.5 160 48.8
PGR083G1511 Punica granatum HOM05D007399 ORTHO05D009341 4.2e-29 132.5 163 48.5
Actinidia09475 Actinidia chinensis HOM05D007399 ORTHO05D009341 7.1e-29 131.7 105 55.2
RcHm_v2.0_Chr6g0284361 Rosa chinensis HOM05D007399 ORTHO05D009341 2.1e-28 130.2 158 51.3
CANSAT01G2134 Cannabis sativa HOM05D007399 ORTHO05D009341 2.7e-28 129.8 109 57.8
FAN15G3119 Fragaria x ananassa HOM05D007399 ORTHO05D009341 2.7e-28 129.8 160 48.1
Lsat_1_v5_gn_5_180581 Lactuca sativa HOM05D007399 ORTHO05D009341 2.7e-28 129.8 163 43.6
Cfa002599 Carpinus fangiana HOM05D007399 ORTHO05D009341 4.6e-28 129.0 129 55.0
AUR62001112 Chenopodium quinoa HOM05D007399 ORTHO05D009341 6.0e-28 128.6 106 54.7
Gorai.007G155900 Gossypium raimondii HOM05D007399 ORTHO05D009341 6.0e-28 128.6 106 56.6
Medtr8g013040 Medicago truncatula HOM05D007399 ORTHO05D009341 1.8e-27 127.1 171 46.8
FvH4_2g18740 Fragaria vesca HOM05D007399 ORTHO05D009341 2.3e-27 126.7 161 46.6
GSVIVG01003279001 Vitis vinifera HOM05D007399 ORTHO05D009341 2.3e-27 126.7 249 34.9
MD05G1173200 Malus domestica HOM05D007399 ORTHO05D009341 3.0e-27 126.3 159 45.9
CANSAT01G0413 Cannabis sativa HOM05D007399 ORTHO05D009341 5.1e-27 125.6 161 42.2
CANSAT01G1231 Cannabis sativa HOM05D007399 ORTHO05D009341 6.7e-27 125.2 109 56.0
PSO357G0666 Papaver somniferum HOM05D007399 ORTHO05D009341 6.7e-27 125.2 117 47.9
Lj3g0000647 Lotus japonicus HOM05D007399 ORTHO05D009341 1.1e-26 124.4 136 45.6
PSO170G3887 Papaver somniferum HOM05D007399 ORTHO05D009341 4.3e-26 122.5 110 50.0
SHI28622 Sapria himalayana HOM05D000002 ORTHO05D000001 7.4e-26 121.7 101 51.5
Migut.D02494 Erythranthe guttata HOM05D007399 ORTHO05D009341 9.7e-26 121.3 111 52.3
FAN24G1833 Fragaria x ananassa HOM05D007399 ORTHO05D009341 9.7e-26 121.3 151 46.4
CAN.G3.2 Capsicum annuum HOM05D007399 ORTHO05D009341 2.2e-25 120.2 151 45.0
TPR.G17137 Trifolium pratense HOM05D007399 ORTHO05D009341 2.2e-25 120.2 179 43.0
ClCG09G008880 Citrullus lanatus HOM05D007399 ORTHO05D009341 2.8e-25 119.8 102 56.9
CANSAT01G2481 Cannabis sativa HOM05D007399 ORTHO05D009341 8.2e-25 118.2 112 51.8
Eucgr.H00781 Eucalyptus grandis HOM05D007399 ORTHO05D009341 8.2e-25 118.2 179 40.2
FAN27G2185 Fragaria x ananassa HOM05D007399 ORTHO05D009341 8.2e-25 118.2 160 45.6
EL10Ac7g17870 Beta vulgaris HOM05D007399 ORTHO05D009341 1.1e-24 117.9 94 55.3
Sc24g0003500 Simmondsia chinensis HOM05D007399 ORTHO05D009341 1.8e-24 117.1 159 42.8
CDE06G2632 Ceratophyllum demersum HOM05D007399 ORTHO05D009341 1.2e-23 114.4 87 60.9
CsaV3_7G026010 Cucumis sativus L. HOM05D007399 ORTHO05D009341 1.5e-23 114.0 172 41.3
AUR62008936 Chenopodium quinoa HOM05D007399 ORTHO05D009341 3.4e-23 112.8 94 57.4
DCAR_000523 Daucus carota HOM05D007399 ORTHO05D009341 3.4e-23 112.8 98 52.0
Lj2A1128G40 Lonicera japonica HOM05D007399 ORTHO05D009341 3.4e-23 112.8 92 56.5
MELO3C021053.2 Cucumis melo HOM05D007399 ORTHO05D009341 5.9e-23 112.1 172 41.3
Sed0009642 Sechium edule HOM05D007399 ORTHO05D009341 1.3e-22 110.9 97 55.7
Solyc09g059950.3 Solanum lycopersicum HOM05D007399 ORTHO05D009341 5.0e-22 109.0 159 40.3
Sopen09g023130 Solanum pennellii HOM05D007399 ORTHO05D009341 8.5e-22 108.2 159 40.3
PGSC0003DMG401023104 Solanum tuberosum HOM05D007399 ORTHO05D009341 2.5e-21 106.7 152 40.1
SalBow6G3187 Salvia bowleyana HOM05D007399 ORTHO05D009341 7.9e-20 101.7 102 48.0
SalBow6G3685 Salvia bowleyana HOM05D007399 ORTHO05D009341 7.9e-20 101.7 102 48.0
Hund20426 Selenicereus undatus HOM05D007399 ORTHO05D009341 6.7e-19 98.6 84 54.8
SEGI_10803 Sequoiadendron giganteum HOM05D007399 ORTHO05D009341 5.3e-16 89.0 84 50.0
Actinidia23717 Actinidia chinensis HOM05D007399 ORTHO05D009341 6.9e-16 88.6 105 43.8
HPP92_011779 Vanilla planifolia HOM05D007399 ORTHO05D009341 6.1e-12 75.5 134 35.8
ATR0609G108 Amborella trichopoda HOM05D007399 ORTHO05D009341 7.9e-12 75.1 66 51.5
Os01g0918400 Oryza sativa ssp. japonica HOM05D007399 ORTHO05D009341 1.5e-10 70.9 64 48.4
Zm00001eb364650 Zea mays HOM05D007399 ORTHO05D009341 3.7e-09 66.2 64 43.8


User provided reference genes

Program Settings