Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR081640 Cardamine hirsuta HOM05D006066 ORTHO05D007720 2.3e-128 462.2 236 100.0
Sp3g06000 Schrenkiella parvula HOM05D006066 ORTHO05D007720 1.1e-93 347.1 229 76.9
AL3G18290 Arabidopsis lyrata HOM05D006066 ORTHO05D007720 1.9e-93 346.3 236 75.0
Thhalv10020116m.g Eutrema salsugineum HOM05D006066 ORTHO05D007720 5.5e-93 344.7 229 75.5
Carub.0003s0657 Capsella rubella HOM05D006066 ORTHO05D007720 6.7e-91 337.8 228 73.7
AT3G07060 Arabidopsis thaliana HOM05D006066 ORTHO05D007720 4.1e-88 328.6 238 71.4
C05p60330 Brassica napus HOM05D006066 ORTHO05D007720 5.9e-79 298.1 228 71.5
BolC5t34680H Brassica oleracea HOM05D006066 ORTHO05D007720 1.3e-78 297.0 229 72.1
BcaC05g29836 Brassica carinata HOM05D006066 ORTHO05D000168 1.7e-78 296.6 229 72.1
Aa31LG5G17620 Aethionema arabicum HOM05D006066 ORTHO05D007720 8.5e-78 294.3 228 65.8
BraA05t22840Z Brassica rapa HOM05D006066 ORTHO05D000168 1.1e-77 293.9 234 70.1
BcaC05g29758 Brassica carinata HOM05D006066 ORTHO05D007720 5.5e-77 291.6 229 71.6
A05p41140 Brassica napus HOM05D006066 ORTHO05D007720 1.2e-71 273.9 243 64.6
THA.LOC104818950 Tarenaya hassleriana HOM05D006066 ORTHO05D007720 4.5e-55 218.8 218 53.2
BcaB05g23643 Brassica carinata HOM05D006066 ORTHO05D007720 2.9e-54 216.1 213 58.7
BcaC03g16146 Brassica carinata HOM05D006066 ORTHO05D007720 2.9e-54 216.1 213 58.7
TWI36G0510 Tripterygium wilfordii HOM05D006066 ORTHO05D007720 5.0e-30 135.6 175 40.0
Gohir.A11G137000 Gossypium hirsutum HOM05D006066 ORTHO05D007720 8.6e-30 134.8 194 37.1
Gohir.D11G143350 Gossypium hirsutum HOM05D006066 ORTHO05D007720 8.6e-30 134.8 233 33.5
Atru.chr11.2652 Acer truncatum HOM05D006066 ORTHO05D007720 1.1e-29 134.4 227 34.4
Duzib133G0184 Durio zibethinus HOM05D006066 ORTHO05D007720 1.8e-27 127.1 173 39.9
FvH4_2g19201 Fragaria vesca HOM05D006066 ORTHO05D007720 1.8e-27 127.1 150 40.7
FAN15G1679 Fragaria x ananassa HOM05D006066 ORTHO05D007720 1.8e-27 127.1 150 40.7
FAN24G1416 Fragaria x ananassa HOM05D006066 ORTHO05D000168 1.8e-27 127.1 150 40.7
Prupe.8G204000 Prunus persica HOM05D006066 ORTHO05D007720 5.2e-27 125.6 168 37.5
Manes.11G092400 Manihot esculenta HOM05D006066 ORTHO05D007720 8.9e-27 124.8 230 33.9
Thecc.01G227100 Theobroma cacao HOM05D006066 ORTHO05D007720 8.9e-27 124.8 233 34.8
Medtr7g026915 Medicago truncatula HOM05D006066 ORTHO05D007720 2.0e-26 123.6 138 42.8
MD10G1165500 Malus domestica HOM05D006066 ORTHO05D007720 5.8e-26 122.1 171 35.1
CANSAT01G1110 Cannabis sativa HOM05D006066 ORTHO05D007720 9.8e-26 121.3 150 40.0
Glyma.19G124200 Glycine max HOM05D006066 ORTHO05D007720 9.8e-26 121.3 168 37.5
FAN27G1043 Fragaria x ananassa HOM05D006066 ORTHO05D007720 1.7e-25 120.6 150 39.3
RcHm_v2.0_Chr6g0284991 Rosa chinensis HOM05D006066 ORTHO05D007720 2.9e-25 119.8 150 40.0
Cfa008679 Carpinus fangiana HOM05D006066 ORTHO05D007720 3.7e-25 119.4 186 39.2
EL10Ac7g17774 Beta vulgaris HOM05D006066 ORTHO05D007720 6.4e-25 118.6 173 34.7
Gorai.007G153600 Gossypium raimondii HOM05D006066 ORTHO05D007720 1.1e-24 117.9 167 35.3
Medtr4g022660 Medicago truncatula HOM05D006066 ORTHO05D007720 1.1e-24 117.9 141 41.8
CiPaw.01G110500 Carya illinoinensis HOM05D006066 ORTHO05D007720 5.4e-24 115.5 188 34.6
Migut.D00528 Erythranthe guttata HOM05D006066 ORTHO05D007720 5.4e-24 115.5 153 35.3
Lj3g0025737 Lotus japonicus HOM05D006066 ORTHO05D007720 9.2e-24 114.8 168 33.9
Phvul.010G014500 Phaseolus vulgaris HOM05D006066 ORTHO05D007720 9.2e-24 114.8 165 38.2
Aqoxy2G03103 Aquilegia oxysepala HOM05D006066 ORTHO05D007720 1.2e-23 114.4 176 34.1
Actinidia09488 Actinidia chinensis HOM05D006066 ORTHO05D007720 3.5e-23 112.8 150 35.3
Actinidia23727 Actinidia chinensis HOM05D006066 ORTHO05D007720 4.6e-23 112.5 175 33.1
MSTRG.21425 Avicennia marina HOM05D006066 ORTHO05D007720 4.6e-23 112.5 199 32.7
Cpa.g.sc8.165 Carica papaya HOM05D006066 ORTHO05D007720 6.0e-23 112.1 133 45.1
PSO782G0283 Papaver somniferum HOM05D006066 ORTHO05D007720 6.0e-23 112.1 226 29.2
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.7e-22 110.5 158 38.0
TPR.G5589 Trifolium pratense HOM05D006066 ORTHO05D007720 2.3e-22 110.2 156 36.5
Hund18348 Selenicereus undatus HOM05D006066 ORTHO05D007720 3.0e-22 109.8 159 37.1
Psat2g159600 Pisum sativum HOM05D006066 ORTHO05D007720 3.9e-22 109.4 175 36.6
AUR62008867 Chenopodium quinoa HOM05D006066 ORTHO05D007720 1.5e-21 107.5 169 35.5
MELO3C026986.2 Cucumis melo HOM05D006066 ORTHO05D007720 1.9e-21 107.1 180 33.3
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 1.9e-21 107.1 146 37.7
CsaV3_3G029870 Cucumis sativus L. HOM05D006066 ORTHO05D007720 2.5e-21 106.7 152 34.2
ECA236G0120 Erigeron canadensis HOM05D006066 ORTHO05D007720 2.5e-21 106.7 171 38.6
AUR62031844 Chenopodium quinoa HOM05D006066 ORTHO05D007720 3.3e-21 106.3 171 33.9
COL.COLO4_07189 Corchorus olitorius HOM05D006066 ORTHO05D007720 3.3e-21 106.3 205 32.7
Eucgr.K03610 Eucalyptus grandis HOM05D006066 ORTHO05D007720 3.3e-21 106.3 180 32.8
CSS0038727 Camellia sinensis var. sinensis HOM05D006066 ORTHO05D007720 5.6e-21 105.5 229 30.6
PSO170G1150 Papaver somniferum HOM05D006066 ORTHO05D007720 5.6e-21 105.5 155 32.3
CSS0045030 Camellia sinensis var. sinensis HOM05D006066 ORTHO05D007720 2.8e-20 103.2 168 32.7
Lalb_Chr07g0194051 Lupinus albus HOM05D006066 ORTHO05D007720 2.8e-20 103.2 167 36.5
Nn1g07817 Nelumbo nucifera HOM05D006066 ORTHO05D007720 4.7e-20 102.4 238 30.3
Rhsim01G0256300 Rhododendron simsii HOM05D006066 ORTHO05D007720 1.4e-19 100.9 237 30.0
Sc24g0003620 Simmondsia chinensis HOM05D006066 ORTHO05D007720 2.3e-19 100.1 182 32.4
vmacro14760 Vaccinium macrocarpon HOM05D006066 ORTHO05D007720 5.2e-19 99.0 232 30.2
SalBow6G7080 Salvia bowleyana HOM05D006066 ORTHO05D007720 7.5e-18 95.1 145 32.4
Sed0017682 Sechium edule HOM05D006066 ORTHO05D007720 7.5e-18 95.1 152 32.9
SEGI_19430 Sequoiadendron giganteum HOM05D006066 ORTHO05D007720 7.5e-18 95.1 163 30.1
Peaxi162Scf00107g01622 Petunia axillaris HOM05D006066 ORTHO05D007720 2.2e-17 93.6 167 34.1
PGR119G0212 Punica granatum HOM05D006066 ORTHO05D007720 1.1e-16 91.3 169 32.0
TAR393G0002 Trochodendron aralioides HOM05D006066 ORTHO05D007720 1.4e-16 90.9 138 34.1
QL06p028120 Quercus lobata HOM05D006066 ORTHO05D007720 2.4e-16 90.1 151 39.1
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 3.2e-16 89.7 178 28.7
Nitab4.5_0000045g0020 Nicotiana tabacum HOM05D006066 ORTHO05D007720 7.1e-16 88.6 150 36.0
Lj2A644T10 Lonicera japonica HOM05D006066 ORTHO05D007720 2.1e-15 87.0 138 34.8
arahy.Tifrunner.gnm1.ann1.9R7KTD Arachis hypogaea HOM05D006066 ORTHO05D007720 6.0e-15 85.5 161 36.0
Zm00001eb173150 Zea mays HOM05D006066 ORTHO05D007720 6.0e-15 85.5 146 34.2
arahy.Tifrunner.gnm1.ann1.50JBL9 Arachis hypogaea HOM05D006066 ORTHO05D007720 7.8e-15 85.1 161 36.0
HanXRQChr04g0110731 Helianthus annuus HOM05D006066 ORTHO05D007720 6.6e-14 82.0 134 31.3
Aqoxy5G00070 Aquilegia oxysepala HOM05D006066 ORTHO05D007720 2.1e-12 77.0 133 35.3
Solyc09g061380.3 Solanum lycopersicum HOM05D006066 ORTHO05D007720 3.6e-12 76.3 173 30.6
Sopen09g024200 Solanum pennellii HOM05D006066 ORTHO05D007720 3.6e-12 76.3 177 29.4
VMungo0331G1566 Vigna mungo HOM05D006066 ORTHO05D007720 4.7e-12 75.9 175 32.6
Glyma.16G068300 Glycine max HOM05D006066 ORTHO05D007720 1.5e-10 70.9 91 37.4
CAN.G154.6 Capsicum annuum HOM05D006066 ORTHO05D007720 3.4e-10 69.7 154 30.5
unitig_22.g5305 Utricularia gibba HOM05D006066 ORTHO05D007720 5.8e-10 68.9 110 31.8
Hma1.2p1_1061F.1_g253440 Hydrangea macrophylla HOM05D006066 ORTHO05D007720 7.6e-10 68.6 95 38.9
SGA_v2.0_scaffold586G53055 Striga asiatica HOM05D006066 ORTHO05D007720 2.9e-09 66.6 187 25.7
SGA_v2.0_scaffold8G04647 Striga asiatica HOM05D006066 ORTHO05D007720 3.7e-09 66.2 187 25.7
MD05G1177000 Malus domestica HOM05D006066 ORTHO05D007720 1.1e-08 64.7 81 34.6
SHI34885 Sapria himalayana HOM05D006066 ORTHO05D007720 7.8e-07 58.5 83 36.1
Cc01_g17160 Coffea canephora HOM05D006066 ORTHO05D007720 3.0e-06 56.6 54 40.7


User provided reference genes

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