Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 6.9e-50 200.7 128 100.0
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.9e-47 192.6 129 96.9
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 9.3e-47 190.3 129 95.3
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 4.6e-46 188.0 128 93.0
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 1.0e-45 186.8 128 80.5
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 1.0e-45 186.8 128 80.5
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 3.0e-45 185.3 128 79.7
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 3.0e-45 185.3 128 79.7
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 3.0e-45 185.3 128 79.7
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 3.0e-45 185.3 128 79.7
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 8.7e-45 183.7 128 79.7
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 1.9e-44 182.6 128 78.9
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 7.4e-44 180.6 129 93.0
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 3.7e-43 178.3 128 91.4
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 8.5e-40 167.2 97 87.6
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 4.2e-39 164.9 99 87.9
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 1.2e-38 163.3 99 85.9
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 2.7e-38 162.2 99 85.9
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 2.7e-38 162.2 97 84.5
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 3.6e-38 161.8 97 86.6
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 6.1e-38 161.0 99 82.8
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 6.1e-38 161.0 99 82.8
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 6.1e-38 161.0 99 82.8
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 7.9e-38 160.6 96 86.5
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 1.8e-37 159.5 95 85.3
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 2.3e-37 159.1 99 81.8
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 2.3e-37 159.1 94 84.0
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 2.3e-37 159.1 97 83.5
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 3.9e-37 158.3 99 78.8
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 8.8e-37 157.1 99 83.8
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 1.1e-36 156.8 99 81.8
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 2.0e-36 156.0 99 80.8
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 2.5e-36 155.6 99 80.8
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 3.3e-36 155.2 95 81.1
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 4.3e-36 154.8 100 82.0
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 4.3e-36 154.8 99 80.8
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 7.4e-36 154.1 99 80.8
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 7.4e-36 154.1 97 79.4
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 7.4e-36 154.1 97 79.4
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 7.4e-36 154.1 94 81.9
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.3e-35 153.3 99 79.8
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 1.3e-35 153.3 99 80.8
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.2e-35 152.5 97 76.3
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 2.8e-35 152.1 98 79.6
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 2.8e-35 152.1 99 77.8
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 3.7e-35 151.8 99 79.8
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 4.8e-35 151.4 97 79.4
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 4.8e-35 151.4 98 77.6
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 6.3e-35 151.0 128 68.0
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 8.2e-35 150.6 99 76.8
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 1.1e-34 150.2 100 81.0
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.4e-34 149.8 99 78.8
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 1.4e-34 149.8 97 75.3
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.4e-34 149.8 97 75.3
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.4e-34 149.8 97 75.3
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.4e-34 149.8 97 75.3
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.4e-34 149.8 99 75.8
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.8e-34 149.4 99 77.8
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.8e-34 149.4 99 76.8
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 2.4e-34 149.1 98 76.5
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 3.1e-34 148.7 97 77.3
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 4.1e-34 148.3 99 76.8
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 4.1e-34 148.3 99 76.8
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 4.1e-34 148.3 96 77.1
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 6.9e-34 147.5 94 78.7
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 6.9e-34 147.5 97 79.4
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 9.1e-34 147.1 99 76.8
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 2.0e-33 146.0 96 77.1
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 5.9e-33 144.4 95 76.8
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 7.7e-33 144.1 99 74.7
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 1.0e-32 143.7 98 76.5
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 1.7e-32 142.9 99 73.7
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 2.9e-32 142.1 94 75.5
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 2.9e-32 142.1 94 75.5
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 6.5e-32 141.0 94 76.6
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 8.5e-32 140.6 99 72.7
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 1.9e-31 139.4 97 72.2
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 4.2e-31 138.3 93 77.4
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 5.5e-31 137.9 97 72.2
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 7.2e-31 137.5 99 70.7
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 7.2e-31 137.5 99 69.7
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 4.7e-30 134.8 100 72.0
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 4.7e-30 134.8 96 69.8
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 6.1e-30 134.4 99 73.7
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.4e-29 133.3 100 71.0
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 2.3e-29 132.5 100 72.0
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 2.3e-29 132.5 100 72.0
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 3.0e-29 132.1 100 72.0
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 6.7e-29 131.0 95 73.7
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 1.5e-28 129.8 95 72.6
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 2.6e-28 129.0 100 67.0
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 2.6e-28 129.0 104 67.3
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 4.4e-28 128.3 94 67.0
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 5.7e-28 127.9 100 68.0
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 9.7e-28 127.1 86 75.6
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 3.7e-27 125.2 100 66.0
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 4.8e-27 124.8 104 67.3
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 1.8e-26 122.9 95 62.1
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 4.1e-26 121.7 92 68.5
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 4.1e-26 121.7 92 68.5
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 5.3e-26 121.3 100 69.0
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.5e-25 119.8 101 62.4
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 5.9e-25 117.9 100 64.0
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 1.0e-24 117.1 98 65.3
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.3e-24 116.7 77 79.2
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 9.4e-23 110.5 97 56.7
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 1.0e-21 107.1 96 59.4
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 3.0e-21 105.5 77 72.7
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 6.7e-21 104.4 101 55.4
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 1.5e-20 103.2 94 58.5
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 3.3e-20 102.1 99 62.6
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 1.3e-19 100.1 97 53.6
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 1.0e-16 90.5 104 51.9
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 1.0e-16 90.5 78 62.8
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 8.5e-16 87.4 98 52.0
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 2.3e-13 79.3 86 50.0
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 2.0e-12 76.3 95 50.5
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 1.7e-08 63.2 58 56.9
SalBow3G3394 Salvia bowleyana HOM05D003064 ORTHO05D001733 2.1e-06 56.2 64 39.1


User provided reference genes

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