Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 1.8e-173 612.5 305 100.0
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 2.5e-98 362.8 266 72.9
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.4e-93 347.1 328 60.1
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 2.1e-92 343.2 324 58.6
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 4.9e-86 322.0 348 54.0
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 2.2e-70 270.0 270 56.3
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 6.4e-70 268.5 300 54.3
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 8.4e-70 268.1 300 54.0
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.5e-68 262.7 252 55.6
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 4.6e-60 235.7 269 52.8
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 1.9e-37 160.6 167 52.1
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 1.9e-37 160.6 167 52.1
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 3.3e-26 123.2 173 39.9
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 3.3e-26 123.2 173 39.9
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 9.7e-26 121.7 197 38.1
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 2.8e-25 120.2 175 40.6
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 6.3e-25 119.0 175 40.0
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 8.2e-25 118.6 176 39.2
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.1e-24 118.2 193 37.8
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 9.1e-24 115.2 175 39.4
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 9.1e-24 115.2 169 39.6
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 9.1e-24 115.2 169 39.6
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.2e-23 114.8 201 37.3
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.5e-23 112.8 162 40.1
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 1.0e-22 111.7 176 39.2
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.9e-22 110.2 189 37.6
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 9.4e-21 105.1 205 38.5
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.8e-19 100.9 205 37.1
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 7.5e-18 95.5 154 37.7
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 2.2e-17 94.0 173 36.4
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.3e-17 92.4 160 37.5
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.3e-17 92.4 160 37.5
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 1.4e-16 91.3 69 66.7
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-15 87.8 162 36.4
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 3.5e-15 86.7 167 38.9
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 1.0e-14 85.1 163 37.4
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.9e-14 83.6 209 34.0
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 6.5e-14 82.4 211 33.2
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 6.5e-14 82.4 206 34.0
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.5e-14 82.4 174 36.2
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.1e-13 81.6 172 35.5
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 1.5e-13 81.3 182 34.6
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 1.5e-13 81.3 179 31.8
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.5e-13 81.3 182 35.7
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.5e-13 80.5 176 34.7
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.2e-13 80.1 213 31.9
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 3.2e-13 80.1 169 34.9
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.2e-13 80.1 176 34.7
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 4.2e-13 79.7 157 38.2
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 4.2e-13 79.7 182 34.1
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 5.5e-13 79.3 159 37.1
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 5.5e-13 79.3 161 37.3
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 7.2e-13 79.0 180 34.4
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 9.4e-13 78.6 193 33.2
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.2e-12 78.2 214 34.1
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-12 77.0 183 33.9
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.6e-12 76.6 204 32.8
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-12 76.6 184 35.3
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-12 76.6 199 34.7
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 3.6e-12 76.6 157 36.9
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 3.6e-12 76.6 182 34.1
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 8.0e-12 75.5 177 33.9
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 8.0e-12 75.5 180 35.6
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-11 75.1 156 36.5
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-11 75.1 185 36.8
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-11 74.7 201 31.3
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-11 74.7 185 34.6
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.8e-11 74.3 184 32.6
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 1.8e-11 74.3 197 36.0
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.8e-11 74.3 202 31.7
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 1.8e-11 74.3 181 33.1
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.0e-11 73.6 181 37.0
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-11 73.6 184 34.2
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 3.0e-11 73.6 192 32.8
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 4.0e-11 73.2 185 34.1
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 4.0e-11 73.2 186 33.9
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 4.0e-11 73.2 159 32.7
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 4.0e-11 73.2 159 32.7
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 5.2e-11 72.8 177 33.9
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 5.2e-11 72.8 177 33.9
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 5.2e-11 72.8 177 33.9
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 5.2e-11 72.8 188 36.2
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 5.2e-11 72.8 159 34.6
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 6.8e-11 72.4 165 35.8
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 6.8e-11 72.4 158 35.4
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 6.8e-11 72.4 185 36.2
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 8.8e-11 72.0 183 32.2
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 8.8e-11 72.0 177 33.3
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 8.8e-11 72.0 185 36.8
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.2e-10 71.6 198 29.8
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 1.2e-10 71.6 178 34.3
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-10 71.6 198 33.8
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-10 71.2 181 33.7
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-10 71.2 198 31.3
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-10 71.2 198 31.3
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.5e-10 71.2 182 34.1
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 1.5e-10 71.2 181 33.7
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 1.5e-10 71.2 168 35.1
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 3.4e-10 70.1 187 32.1
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.4e-10 69.7 323 27.9
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.7e-10 69.3 179 33.0
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 5.7e-10 69.3 186 37.1
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.5e-10 68.9 216 31.5
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 7.5e-10 68.9 185 36.2
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 7.5e-10 68.9 185 36.2
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 9.8e-10 68.6 185 35.1
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 9.8e-10 68.6 164 34.1
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 1.7e-09 67.8 179 31.8
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-09 67.0 210 31.4
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 3.7e-09 66.6 225 32.4
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 6.3e-09 65.9 165 33.3
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-08 65.1 133 33.1
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 1.8e-08 64.3 193 34.2
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-08 63.9 158 34.2
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 2.4e-08 63.9 169 33.1
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 5.4e-08 62.8 193 30.1
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 5.4e-08 62.8 192 31.2
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 7.0e-08 62.4 168 33.9
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 7.0e-08 62.4 194 33.5
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 9.1e-08 62.0 165 35.8
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.6e-07 61.2 179 34.1
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.5e-07 60.1 325 28.3
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.5e-07 60.1 178 32.6
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.5e-07 59.7 158 32.9
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 4.5e-07 59.7 207 32.4
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 5.9e-07 59.3 205 33.7
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.7e-06 57.8 178 31.5
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 2.3e-06 57.4 207 30.9
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-06 57.0 125 32.8
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 3.8e-06 56.6 74 47.3
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 6.5e-06 55.8 177 32.2


User provided reference genes

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