Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR080240 Cardamine hirsuta HOM05D001444 ORTHO05D003766 1.6e-186 656.0 336 100.0
Carub.0003s0515 Capsella rubella HOM05D001444 ORTHO05D003766 6.1e-98 361.7 271 72.0
AT3G05790 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 1.2e-96 357.5 273 70.7
AL3G16530 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.3e-95 354.0 272 71.7
AT5G26860 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 2.8e-90 336.3 301 61.8
Sp2g21140 Schrenkiella parvula HOM05D001444 ORTHO05D003766 4.4e-88 328.9 298 62.1
Thhalv10022093m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 4.9e-87 325.5 272 66.5
Carub.0006s2452 Capsella rubella HOM05D001444 ORTHO05D003766 6.4e-87 325.1 299 60.5
CARHR186670 Cardamine hirsuta HOM05D001444 ORTHO05D003766 1.5e-83 313.9 297 59.3
AL6G38730 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.4e-81 307.4 283 60.4
A06p37080 Brassica napus HOM05D001444 ORTHO05D003766 4.0e-81 305.8 287 59.6
BcaNung03919 Brassica carinata HOM05D001444 ORTHO05D003766 1.2e-80 304.3 286 61.2
C07p41360 Brassica napus HOM05D001444 ORTHO05D003766 1.5e-80 303.9 301 58.5
BcaNung03668 Brassica carinata HOM05D001444 ORTHO05D003766 1.7e-79 300.4 288 60.1
BraA06t26633Z Brassica rapa HOM05D001444 ORTHO05D003766 2.9e-79 299.7 289 59.2
Thhalv10003617m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 1.1e-78 297.7 287 58.2
BraA01t04474Z Brassica rapa HOM05D001444 ORTHO05D003766 4.1e-78 295.8 284 59.9
A02p38980 Brassica napus HOM05D001444 ORTHO05D003766 5.4e-78 295.4 328 54.6
Ciclev10000120m.g Citrus clementina HOM05D001444 ORTHO05D003766 5.4e-78 295.4 307 56.7
BraA02t08868Z Brassica rapa HOM05D001444 ORTHO05D003766 1.6e-77 293.9 326 54.6
BolC7t44666H Brassica oleracea HOM05D001444 ORTHO05D003766 3.5e-77 292.7 297 58.2
C02p58570 Brassica napus HOM05D001444 ORTHO05D003766 4.6e-77 292.4 294 58.5
BolC2t11917H Brassica oleracea HOM05D001444 ORTHO05D003766 3.9e-76 289.3 293 58.4
Aa31LG11G9790 Aethionema arabicum HOM05D001444 ORTHO05D003766 6.6e-76 288.5 288 59.0
Gohir.A11G273200 Gossypium hirsutum HOM05D001444 ORTHO05D003766 1.1e-75 287.7 292 56.5
BcaC03g17826 Brassica carinata HOM05D001444 ORTHO05D003766 7.3e-75 285.0 293 57.0
BolC1t05667H Brassica oleracea HOM05D001444 ORTHO05D003766 9.5e-75 284.6 284 59.5
Gorai.004G236600 Gossypium raimondii HOM05D001444 ORTHO05D003766 8.1e-74 281.6 294 56.5
Duzib177G0746 Durio zibethinus HOM05D001444 ORTHO05D003766 1.4e-73 280.8 295 56.9
Gohir.D08G222800 Gossypium hirsutum HOM05D001444 ORTHO05D003766 3.1e-73 279.6 294 56.1
Gohir.A08G205900 Gossypium hirsutum HOM05D001444 ORTHO05D003766 4.0e-73 279.3 294 56.1
Gohir.D11G283300 Gossypium hirsutum HOM05D001444 ORTHO05D003766 6.8e-73 278.5 294 55.4
Thecc.05G322700 Theobroma cacao HOM05D001444 ORTHO05D003766 8.9e-73 278.1 294 55.1
TWI56G1076 Tripterygium wilfordii HOM05D001444 ORTHO05D003766 2.0e-72 276.9 317 53.6
AL3G16520 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 2.2e-71 273.5 306 54.6
Gorai.007G306200 Gossypium raimondii HOM05D001444 ORTHO05D003766 2.2e-71 273.5 294 54.8
BraA06t23480Z Brassica rapa HOM05D001444 ORTHO05D003766 3.8e-71 272.7 281 59.1
AL845U10010 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 4.9e-71 272.3 307 54.7
ClCG00G002460 Citrullus lanatus HOM05D001444 ORTHO05D003766 6.4e-71 271.9 287 54.7
ClCG02G014960 Citrullus lanatus HOM05D001444 ORTHO05D003766 6.4e-71 271.9 287 54.7
MD12G1206100 Malus domestica HOM05D001444 ORTHO05D003766 1.9e-70 270.4 291 54.0
AT3G05780 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 2.4e-70 270.0 302 55.6
Cpa.g.sc48.159 Carica papaya HOM05D001444 ORTHO05D003766 2.4e-70 270.0 290 55.5
GSVIVG01031236001 Vitis vinifera HOM05D001444 ORTHO05D003766 5.4e-70 268.9 288 54.5
CiPaw.07G029500 Carya illinoinensis HOM05D001444 ORTHO05D003766 2.1e-69 266.9 291 54.0
QL03p039871 Quercus lobata HOM05D001444 ORTHO05D003766 1.3e-68 264.2 294 52.7
CsaV3_2G007040 Cucumis sativus L. HOM05D001444 ORTHO05D003766 5.1e-68 262.3 285 54.7
Duzib106G0804 Durio zibethinus HOM05D001444 ORTHO05D003766 6.6e-68 261.9 303 52.5
Sed0006327 Sechium edule HOM05D001444 ORTHO05D003766 6.6e-68 261.9 292 53.1
arahy.Tifrunner.gnm1.ann1.06RU3W Arachis hypogaea HOM05D001444 ORTHO05D003766 2.5e-67 260.0 299 53.5
Prupe.6G313300 Prunus persica HOM05D001444 ORTHO05D003766 2.5e-67 260.0 291 54.0
QL03p013621 Quercus lobata HOM05D001444 ORTHO05D003766 2.5e-67 260.0 293 52.2
arahy.Tifrunner.gnm1.ann1.UJ98VB Arachis hypogaea HOM05D001444 ORTHO05D003766 3.3e-67 259.6 299 53.5
Potri.013G008900 Populus trichocarpa HOM05D001444 ORTHO05D003766 4.3e-67 259.2 299 51.8
PGR083G0370 Punica granatum HOM05D001444 ORTHO05D003766 4.3e-67 259.2 292 53.8
Cfa006700 Carpinus fangiana HOM05D001444 ORTHO05D003766 1.6e-66 257.3 290 53.8
CANSAT54G1984 Cannabis sativa HOM05D001444 ORTHO05D003766 6.2e-66 255.4 288 53.5
THA.LOC104820100 Tarenaya hassleriana HOM05D001444 ORTHO05D003766 8.1e-66 255.0 414 42.0
TAR636G1039 Trochodendron aralioides HOM05D001444 ORTHO05D003766 8.1e-66 255.0 220 63.2
Nn3g21688 Nelumbo nucifera HOM05D001444 ORTHO05D003766 1.1e-65 254.6 235 60.4
Manes.08G111500 Manihot esculenta HOM05D001444 ORTHO05D003766 1.4e-65 254.2 293 51.5
Potri.005G017600 Populus trichocarpa HOM05D001444 ORTHO05D003766 1.4e-65 254.2 299 51.5
Duzib128G0547 Durio zibethinus HOM05D001444 ORTHO05D003766 1.8e-65 253.8 297 52.5
FvH4_6g07420 Fragaria vesca HOM05D001444 ORTHO05D003766 2.4e-65 253.4 288 52.1
COL.COLO4_05554 Corchorus olitorius HOM05D001444 ORTHO05D003766 5.3e-65 252.3 306 50.3
Aqoxy7G03321 Aquilegia oxysepala HOM05D001444 ORTHO05D003766 9.0e-65 251.5 260 57.7
FAN05G3889 Fragaria x ananassa HOM05D001444 ORTHO05D003766 9.0e-65 251.5 289 52.6
Actinidia01682 Actinidia chinensis HOM05D001444 ORTHO05D003766 2.0e-64 250.4 289 51.9
FAN14G2853 Fragaria x ananassa HOM05D001444 ORTHO05D003766 2.0e-64 250.4 288 51.7
FAN09G2106 Fragaria x ananassa HOM05D001444 ORTHO05D003766 3.4e-64 249.6 289 52.2
MD04G1193200 Malus domestica HOM05D001444 ORTHO05D003766 3.4e-64 249.6 288 51.4
Hma1.2p1_0008F-1.1_g005610 Hydrangea macrophylla HOM05D001444 ORTHO05D003766 5.8e-64 248.8 293 50.9
TAR633G2402 Trochodendron aralioides HOM05D001444 ORTHO05D003766 7.6e-64 248.4 219 61.2
Cc02_g35000 Coffea canephora HOM05D001444 ORTHO05D003766 1.3e-63 247.7 293 51.5
Nn4g25600 Nelumbo nucifera HOM05D001444 ORTHO05D003766 2.2e-63 246.9 221 60.6
Psat0s3400g0080 Pisum sativum HOM05D001444 ORTHO05D003766 2.2e-63 246.9 284 53.9
Prupe.2G038600 Prunus persica HOM05D001444 ORTHO05D003766 2.2e-63 246.9 288 51.0
Medtr1g084020 Medicago truncatula HOM05D001444 ORTHO05D003766 4.9e-63 245.7 290 51.7
Phvul.007G201200 Phaseolus vulgaris HOM05D001444 ORTHO05D003766 4.9e-63 245.7 280 51.8
Eucgr.L00266 Eucalyptus grandis HOM05D001444 ORTHO05D003766 6.4e-63 245.4 295 50.2
Glyma.20G097700 Glycine max HOM05D001444 ORTHO05D003766 6.4e-63 245.4 284 52.8
MD02G1284000 Malus domestica HOM05D001444 ORTHO05D003766 6.4e-63 245.4 284 52.1
FAN02G3316 Fragaria x ananassa HOM05D001444 ORTHO05D003766 8.4e-63 245.0 290 50.3
CSS0031861 Camellia sinensis var. sinensis HOM05D001444 ORTHO05D003766 1.4e-62 244.2 290 50.7
TPR.G2620 Trifolium pratense HOM05D001444 ORTHO05D003766 1.4e-62 244.2 282 52.1
Solyc10g024320.2 Solanum lycopersicum HOM05D001444 ORTHO05D003766 2.4e-62 243.4 291 51.2
Oeu053708.1 Olea europaea HOM05D001444 ORTHO05D003766 3.2e-62 243.0 289 51.9
CDE11G0937 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 4.2e-62 242.7 293 50.9
Ca_10170_v3 Cicer arietinum L. HOM05D001444 ORTHO05D003766 4.2e-62 242.7 285 53.3
Glyma.10G147200 Glycine max HOM05D001444 ORTHO05D003766 4.2e-62 242.7 282 52.8
Lalb_Chr21g0310321 Lupinus albus HOM05D001444 ORTHO05D003766 4.2e-62 242.7 222 59.9
ATR0796G182 Amborella trichopoda HOM05D001444 ORTHO05D003766 7.1e-62 241.9 260 54.6
vmacro19754 Vaccinium macrocarpon HOM05D001444 ORTHO05D003766 7.1e-62 241.9 224 59.4
MSTRG.27942 Avicennia marina HOM05D001444 ORTHO05D003766 9.3e-62 241.5 285 50.9
Sopen10g009280 Solanum pennellii HOM05D001444 ORTHO05D003766 9.3e-62 241.5 291 50.9
BcaC08g43275 Brassica carinata HOM05D001444 ORTHO05D003766 1.2e-61 241.1 260 57.3
Dinv30892 Davidia involucrata HOM05D001444 ORTHO05D003766 1.2e-61 241.1 220 59.1
VMungo0720G2265 Vigna mungo HOM05D001444 ORTHO05D003766 2.1e-61 240.4 282 51.4
unitig_26.g9563 Utricularia gibba HOM05D001444 ORTHO05D003766 4.6e-61 239.2 218 59.2
Lsat_1_v5_gn_5_103920 Lactuca sativa HOM05D001444 ORTHO05D003766 6.0e-61 238.8 285 51.6
SalBow2G0724 Salvia bowleyana HOM05D001444 ORTHO05D003766 1.7e-60 237.3 281 51.6
HanXRQChr16g0513821 Helianthus annuus HOM05D001444 ORTHO05D003766 2.3e-60 236.9 284 52.1
C06p06260 Brassica napus HOM05D001444 ORTHO05D003766 3.0e-60 236.5 274 54.4
BolC6t35735H Brassica oleracea HOM05D001444 ORTHO05D003766 3.0e-60 236.5 274 54.4
Lalb_Chr02g0147821 Lupinus albus HOM05D001444 ORTHO05D003766 5.1e-60 235.7 280 51.8
Migut.N01380 Erythranthe guttata HOM05D001444 ORTHO05D003766 6.6e-60 235.3 285 50.5
DCAR_017356 Daucus carota HOM05D001444 ORTHO05D003766 3.3e-59 233.0 272 51.5
SHI18059 Sapria himalayana HOM05D001444 ORTHO05D003766 3.3e-59 233.0 204 60.3
RcHm_v2.0_Chr3g0457021 Rosa chinensis HOM05D001444 ORTHO05D003766 7.3e-59 231.9 290 50.3
PSO063G2884 Papaver somniferum HOM05D001444 ORTHO05D003766 9.6e-59 231.5 229 55.9
PSO782G1742 Papaver somniferum HOM05D001444 ORTHO05D003766 1.3e-58 231.1 228 55.3
Sabra13G0007500 Salix brachista HOM05D001444 ORTHO05D003766 1.6e-58 230.7 189 64.6
SGA_v2.0_scaffold37G14611 Striga asiatica HOM05D001444 ORTHO05D003766 6.2e-58 228.8 218 55.5
Sc06g0005760 Simmondsia chinensis HOM05D001444 ORTHO05D003766 1.4e-57 227.6 292 50.3
Lj5g0020416 Lotus japonicus HOM05D001444 ORTHO05D003766 1.8e-57 227.3 283 50.9
Zm00001eb111810 Zea mays HOM05D001444 ORTHO05D003766 2.4e-57 226.9 250 53.2
Haze_04062 Corylus avellana HOM05D001444 ORTHO05D003766 3.1e-57 226.5 290 49.3
Rhsim05G0131900 Rhododendron simsii HOM05D001444 ORTHO05D003766 3.1e-57 226.5 318 46.2
Zm00001eb331350 Zea mays HOM05D001444 ORTHO05D003766 3.1e-57 226.5 278 48.2
ECA234G1965 Erigeron canadensis HOM05D001444 ORTHO05D003766 4.0e-57 226.1 224 57.6
BcaC09g47850 Brassica carinata HOM05D001444 ORTHO05D003766 2.0e-56 223.8 175 68.6
RcHm_v2.0_Chr1g0325611 Rosa chinensis HOM05D001444 ORTHO05D003766 9.9e-56 221.5 262 50.8
Dinv24440 Davidia involucrata HOM05D001444 ORTHO05D003766 4.9e-55 219.2 267 50.2
FAN03G3407 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.1e-54 218.0 262 49.2
FAN10G3276 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.4e-54 217.6 262 49.2
CAN.G2431.1 Capsicum annuum HOM05D001444 ORTHO05D003766 1.6e-53 214.2 284 48.6
A06p02720 Brassica napus HOM05D001444 ORTHO05D003766 2.7e-53 213.4 240 54.2
FvH4_7g03300 Fragaria vesca HOM05D001444 ORTHO05D003766 2.3e-52 210.3 262 47.7
Lj5A334G51 Lonicera japonica HOM05D001444 ORTHO05D003766 3.0e-52 209.9 189 58.2
TAR365G0568 Trochodendron aralioides HOM05D001444 ORTHO05D003766 1.9e-51 207.2 227 50.2
Nitab4.5_0003894g0030 Nicotiana tabacum HOM05D001444 ORTHO05D003766 9.6e-51 204.9 292 45.9
EL10Ac4g09446 Beta vulgaris HOM05D001444 ORTHO05D003766 1.3e-50 204.5 277 46.2
FAN06G0007 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.6e-50 204.1 265 46.8
HPP92_027566 Vanilla planifolia HOM05D001444 ORTHO05D003766 9.0e-49 198.4 224 49.1
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 5.8e-48 195.7 293 46.4
A06p02730 Brassica napus HOM05D001444 ORTHO05D003766 8.4e-47 191.8 239 49.0
MELO3C004189.2 Cucumis melo HOM05D001444 ORTHO05D003766 2.5e-46 190.3 321 42.7
BcaB07g33548 Brassica carinata HOM05D001444 ORTHO05D003766 3.2e-46 189.9 263 46.8
AUR62006755 Chenopodium quinoa HOM05D001444 ORTHO05D003766 6.0e-45 185.7 190 52.6
AUR62000399 Chenopodium quinoa HOM05D001444 ORTHO05D003766 7.9e-45 185.3 190 52.6
DCAR_005419 Daucus carota HOM05D001444 ORTHO05D003766 9.6e-43 178.3 160 60.0
Zm00001eb014570 Zea mays HOM05D001444 ORTHO05D003766 9.6e-43 178.3 267 41.6
MD07G1050000 Malus domestica HOM05D001444 ORTHO05D003766 5.3e-41 172.6 287 42.9
Ah.03g134540 Amaranthus hybridus HOM05D001444 ORTHO05D003766 1.0e-39 168.3 258 44.6
BolC6t35734H Brassica oleracea HOM05D001444 ORTHO05D003766 1.9e-38 164.1 257 44.0
BcaB07g33551 Brassica carinata HOM05D001444 ORTHO05D003766 2.7e-37 160.2 274 42.3
QL03p013575 Quercus lobata HOM05D001444 ORTHO05D003766 1.8e-36 157.5 175 50.9
C06p06230 Brassica napus HOM05D001444 ORTHO05D003766 3.3e-35 153.3 265 41.1
SMO358G0399 Selaginella moellendorffii HOM05D001444 ORTHO05D003766 3.3e-35 153.3 206 42.7
C06p06270 Brassica napus HOM05D001444 ORTHO05D003766 3.7e-34 149.8 217 47.0
Peaxi162Scf01208g00007 Petunia axillaris HOM05D001444 ORTHO05D003766 2.2e-31 140.6 164 48.2
AagrBONN_evm.TU.Sc2ySwM_228.1077 Anthoceros agrestis HOM05D001444 ORTHO05D003766 6.5e-31 139.0 225 38.2
C08p03360 Brassica napus HOM05D001444 ORTHO05D014980 2.5e-30 137.1 126 57.1
Oeu064819.1 Olea europaea HOM05D001444 ORTHO05D003766 3.2e-30 136.7 291 37.5
Pp3c13_13900 Physcomitrium patens HOM05D001444 ORTHO05D003766 5.5e-30 136.0 257 35.4
C05p14480 Brassica napus HOM05D001444 ORTHO05D014980 1.2e-29 134.8 134 54.5
C09p35940 Brassica napus HOM05D001444 ORTHO05D014980 1.2e-29 134.8 134 54.5
BolC9t56426H Brassica oleracea HOM05D001444 ORTHO05D014980 1.2e-29 134.8 134 54.5
BcaC08g43276 Brassica carinata HOM05D001444 ORTHO05D003766 7.9e-29 132.1 159 49.7
BolC8t47133H Brassica oleracea HOM05D001444 ORTHO05D014980 2.5e-27 127.1 112 59.8
EL10Ac1g02045 Beta vulgaris HOM05D000232 ORTHO05D000145 7.4e-27 125.6 127 55.1
QL03p039924 Quercus lobata HOM05D001444 ORTHO05D003766 2.4e-25 120.6 179 43.0
SEGI_11007 Sequoiadendron giganteum HOM05D001444 ORTHO05D003766 1.2e-24 118.2 124 54.8
BolC5t32653H Brassica oleracea HOM05D001444 ORTHO05D014980 1.0e-23 115.2 135 48.9
BolC9t58100H Brassica oleracea HOM05D001444 ORTHO05D014980 1.3e-23 114.8 139 48.2
QL03p013604 Quercus lobata HOM05D001444 ORTHO05D003766 2.2e-23 114.0 184 42.9
Actinidia01509 Actinidia chinensis HOM05D001444 ORTHO05D003766 1.4e-22 111.3 157 47.1
C05p39200 Brassica napus HOM05D001444 ORTHO05D014980 1.4e-22 111.3 131 48.9
CBR_g37235 Chara braunii HOM05D001444 ORTHO05D003766 7.9e-21 105.5 174 39.1
BcaC04g21082 Brassica carinata HOM05D001444 ORTHO05D014980 1.1e-19 101.7 117 49.6
Atru.chr2.183 Acer truncatum HOM05D001444 ORTHO05D003766 5.7e-19 99.4 287 31.7
C09p52310 Brassica napus HOM05D001444 ORTHO05D014980 1.5e-16 91.3 136 42.6
HPP92_017244 Vanilla planifolia HOM05D001444 ORTHO05D003766 5.9e-16 89.4 56 73.2
BcaC05g27912 Brassica carinata HOM05D001444 ORTHO05D003766 1.7e-15 87.8 89 53.9
Atru.chr2.221 Acer truncatum HOM05D001444 ORTHO05D003766 2.9e-15 87.0 55 78.2
Cre06.g281350 Chlamydomonas reinhardtii HOM05D001444 ORTHO05D003766 3.8e-15 86.7 189 30.7
MCO16G463 Micromonas commoda HOM05D001444 ORTHO05D003766 6.1e-13 79.3 268 26.1
Mapoly0002s0303 Marchantia polymorpha HOM05D001444 ORTHO05D003766 1.8e-12 77.8 71 46.5
Mapoly1100s0003 Marchantia polymorpha HOM05D001444 ORTHO05D031226 6.7e-12 75.9 123 35.8
BcaC09g47851 Brassica carinata HOM05D001444 ORTHO05D003766 2.8e-10 70.5 98 50.0
BraA05t22943Z Brassica rapa HOM05D001135 ORTHO05D001005 2.4e-09 67.4 101 48.5
Cfa024900 Carpinus fangiana HOM05D001444 ORTHO05D003766 5.3e-09 66.2 234 24.4
Duzib177G0618 Durio zibethinus HOM05D006888 ORTHO05D008371 1.5e-06 58.2 112 39.3


User provided reference genes

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