Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.5e-141 505.0 260 100.0
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 9.5e-115 417.2 220 97.3
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.8e-113 412.9 221 95.9
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 2.6e-112 409.1 221 94.6
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 5.8e-112 407.9 221 94.1
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 5.8e-112 407.9 221 94.6
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 4.9e-111 404.8 262 82.1
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 8.4e-111 404.1 221 93.7
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.9e-110 402.9 219 93.6
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 2.4e-110 402.5 221 92.8
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 2.4e-110 402.5 219 93.6
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 3.2e-110 402.1 219 93.6
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.2e-109 400.2 219 93.2
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 1.2e-109 400.2 219 93.2
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 1.7e-108 396.4 221 91.4
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 2.3e-108 396.0 221 91.4
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 2.8e-106 389.0 233 87.1
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 7.8e-101 370.9 219 84.5
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.2e-96 357.1 220 81.8
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.2e-95 352.8 220 82.7
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 3.8e-95 352.1 219 81.3
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 3.8e-95 352.1 219 80.8
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 4.9e-95 351.7 220 80.9
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 4.9e-95 351.7 219 83.1
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 8.4e-95 350.9 219 82.2
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 3.2e-94 349.0 219 82.2
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.4e-94 348.2 219 81.3
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 7.1e-94 347.8 220 79.5
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 9.3e-94 347.4 219 81.3
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.6e-93 346.7 219 81.3
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 2.1e-93 346.3 220 80.5
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 3.0e-92 342.4 221 78.3
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 3.0e-92 342.4 219 79.5
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 3.9e-92 342.0 219 79.5
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 5.1e-92 341.7 220 78.6
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.1e-91 340.5 219 79.0
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 1.5e-91 340.1 235 75.7
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 3.3e-91 339.0 220 76.4
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 3.3e-91 339.0 220 79.1
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 4.3e-91 338.6 219 76.3
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 5.6e-91 338.2 220 77.3
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 5.6e-91 338.2 219 75.8
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 5.6e-91 338.2 219 76.3
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 7.4e-91 337.8 220 75.0
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 9.6e-91 337.4 220 76.8
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 9.6e-91 337.4 220 76.8
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.3e-90 337.0 220 77.7
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 1.6e-90 336.7 220 77.7
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.7e-90 335.5 221 79.2
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 3.7e-90 335.5 220 78.2
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 4.8e-90 335.1 221 77.8
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 4.8e-90 335.1 219 78.1
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 6.2e-90 334.7 220 77.3
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 8.1e-90 334.3 220 76.8
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 8.1e-90 334.3 220 77.7
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 8.1e-90 334.3 219 76.3
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 8.1e-90 334.3 220 77.3
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 8.1e-90 334.3 219 78.1
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.1e-89 334.0 220 75.9
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.1e-89 334.0 220 74.5
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.4e-89 333.6 220 76.8
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.4e-89 333.6 220 77.3
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.4e-89 333.6 220 75.0
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 1.4e-89 333.6 220 77.3
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 1.8e-89 333.2 220 76.4
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 2.4e-89 332.8 220 77.3
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 2.4e-89 332.8 225 76.4
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 3.1e-89 332.4 220 77.3
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 3.1e-89 332.4 219 75.3
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 3.1e-89 332.4 219 77.6
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 4.0e-89 332.0 220 77.7
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 4.0e-89 332.0 220 76.4
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 5.3e-89 331.6 220 76.8
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 5.3e-89 331.6 220 75.9
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 6.9e-89 331.3 220 76.8
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 9.0e-89 330.9 220 76.4
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 1.2e-88 330.5 219 74.4
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 1.2e-88 330.5 220 76.8
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.0e-88 329.7 220 76.4
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 2.6e-88 329.3 220 76.4
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.6e-88 329.3 221 76.9
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 7.6e-88 327.8 217 76.5
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 9.9e-88 327.4 220 76.8
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 9.9e-88 327.4 218 76.6
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 9.9e-88 327.4 218 77.1
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 1.3e-87 327.0 220 75.9
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.7e-87 326.6 219 76.3
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.7e-87 326.6 219 75.3
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.7e-87 326.6 220 74.5
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 2.9e-87 325.9 220 77.3
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.9e-87 325.9 219 75.8
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 4.9e-87 325.1 221 73.3
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 4.9e-87 325.1 217 76.5
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 6.4e-87 324.7 218 75.7
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 6.4e-87 324.7 261 65.9
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 8.4e-87 324.3 217 76.0
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.9e-86 323.2 220 76.4
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 5.5e-86 321.6 218 75.2
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 9.3e-86 320.9 216 75.5
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 9.3e-86 320.9 216 76.4
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 1.8e-84 316.6 219 72.6
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.8e-84 316.6 220 73.6
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 5.1e-84 315.1 219 73.1
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 6.7e-84 314.7 202 78.7
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 6.7e-84 314.7 218 73.9
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 8.7e-84 314.3 225 71.6
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 1.1e-83 313.9 218 73.4
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.9e-83 313.2 221 73.3
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.9e-83 313.2 221 71.0
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 3.3e-83 312.4 238 69.3
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 4.3e-83 312.0 219 73.1
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 1.6e-82 310.1 217 72.8
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.1e-82 309.7 241 69.7
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 4.8e-82 308.5 218 72.9
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.8e-81 306.6 202 75.7
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 3.1e-81 305.8 235 68.9
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 1.2e-80 303.9 221 69.2
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 2.6e-80 302.8 221 69.7
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.0e-79 300.8 296 58.4
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 5.5e-78 295.0 219 68.5
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 3.9e-76 288.9 223 65.0
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 5.0e-71 271.9 166 80.7
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 3.2e-70 269.2 217 65.4
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 6.1e-69 265.0 159 82.4
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 7.9e-69 264.6 245 61.2
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 2.3e-68 263.1 218 60.6
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 5.1e-68 261.9 221 65.2
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 9.7e-67 257.7 226 64.2
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.1e-65 254.2 221 62.9
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 3.4e-64 249.2 217 57.6
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.7e-63 246.9 217 64.1
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 1.8e-60 236.9 219 59.8
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.4e-57 227.3 145 79.3
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.6e-56 223.0 126 86.5
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.0e-55 221.1 387 39.8
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 7.2e-54 214.9 126 82.5
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 2.7e-53 213.0 213 52.6
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.3e-52 209.9 221 56.6
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 7.2e-46 188.3 148 62.8
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 9.4e-46 188.0 180 53.9
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 3.1e-41 172.9 198 51.0
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 7.0e-41 171.8 214 43.9
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 8.0e-37 158.3 219 40.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 7.0e-33 145.2 198 47.5
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 3.5e-32 142.9 84 88.1
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 5.0e-31 139.0 84 78.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.6e-19 100.1 87 65.5
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 1.1e-17 94.7 87 66.7
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.4e-17 94.4 149 39.6
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.6e-16 90.9 86 60.5
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 1.1e-14 84.7 202 29.2
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 7.3e-06 55.5 61 42.6


User provided reference genes

Program Settings