Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 2.0e-75 287.7 190 100.0
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 7.2e-65 252.7 190 85.8
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 4.7e-64 250.0 191 85.3
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 8.3e-61 239.2 194 84.0
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 1.1e-57 228.8 190 78.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 5.7e-46 189.9 191 69.6
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 3.3e-41 174.1 190 55.8
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 3.3e-41 174.1 190 55.8
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 5.6e-41 173.3 190 55.8
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 2.8e-40 171.0 190 55.3
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 1.6e-35 155.2 190 50.0
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 3.4e-22 110.9 190 37.4
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 9.9e-22 109.4 187 36.9
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 1.4e-20 105.5 142 54.2
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 1.4e-20 105.5 109 45.9
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 2.4e-20 104.8 142 40.1
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 4.1e-20 104.0 111 47.7
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 4.1e-20 104.0 188 35.6
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 4.1e-20 104.0 188 35.6
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 5.4e-20 103.6 111 47.7
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 9.2e-20 102.8 111 46.8
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 1.2e-19 102.4 155 41.3
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 1.6e-19 102.1 107 67.3
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 1.6e-19 102.1 108 53.7
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.6e-19 102.1 190 50.5
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.1e-19 101.7 107 67.3
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 4.6e-19 100.5 110 70.0
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.6e-19 100.5 107 48.6
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 6.0e-19 100.1 156 40.4
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 7.8e-19 99.8 110 47.3
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 1.0e-18 99.4 190 48.4
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.7e-18 98.6 190 50.5
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 2.3e-18 98.2 72 65.3
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 2.3e-18 98.2 75 60.0
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 3.0e-18 97.8 106 69.8
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.1e-18 97.1 189 46.6
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.1e-18 97.1 189 46.6
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 6.6e-18 96.7 110 43.6
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 6.6e-18 96.7 75 60.0
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 8.6e-18 96.3 197 47.2
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.1e-17 95.9 98 48.0
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 1.1e-17 95.9 103 68.9
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 1.1e-17 95.9 111 66.7
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.9e-17 95.1 75 58.7
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 1.9e-17 95.1 74 58.1
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 2.5e-17 94.7 72 62.5
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 4.3e-17 94.0 75 57.3
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 4.3e-17 94.0 119 44.5
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 5.6e-17 93.6 122 42.6
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 5.6e-17 93.6 110 44.5
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 7.3e-17 93.2 105 42.9
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 7.3e-17 93.2 74 58.1
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 1.2e-16 92.4 189 32.3
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 2.1e-16 91.7 104 42.3
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 3.6e-16 90.9 190 33.7
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 8.1e-16 89.7 109 43.1
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 8.1e-16 89.7 109 43.1
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 3.1e-15 87.8 192 33.3
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 3.1e-15 87.8 189 33.9
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 3.1e-15 87.8 155 37.4
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 4.0e-15 87.4 110 42.7
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 4.0e-15 87.4 63 61.9
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 5.2e-15 87.0 103 39.8
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 5.2e-15 87.0 68 58.8
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 6.8e-15 86.7 108 41.7
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 1.2e-14 85.9 72 55.6
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 2.0e-14 85.1 72 52.8
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 2.6e-14 84.7 73 50.7
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 2.6e-14 84.7 68 55.9
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 2.6e-14 84.7 159 35.2
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 3.4e-14 84.3 69 52.2
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 2.2e-13 81.6 71 52.1
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 2.2e-13 81.6 98 46.9
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 2.2e-13 81.6 72 51.4
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 3.8e-13 80.9 106 39.6
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 1.1e-12 79.3 191 31.4
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 3.2e-12 77.8 72 45.8
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 3.2e-12 77.8 74 47.3
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 4.2e-12 77.4 74 47.3
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 4.2e-12 77.4 64 54.7
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 5.4e-12 77.0 146 41.1
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 7.1e-12 76.6 63 54.0
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 7.1e-12 76.6 76 84.2
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 9.3e-12 76.3 68 52.9
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 2.7e-11 74.7 146 32.9
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 3.9e-10 70.9 107 31.8
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 8.7e-10 69.7 105 37.1
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 2.5e-09 68.2 69 47.8
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 1.6e-08 65.5 76 44.7
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 2.4e-07 61.6 66 42.4
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 3.1e-07 61.2 47 66.0


User provided reference genes

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