Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 0.0e+00 1322.8 712 100.0
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 6.3e-286 987.3 726 74.4
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 3.6e-281 971.5 727 74.0
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 1.2e-271 939.9 726 72.2
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 1.4e-264 916.4 723 71.0
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 3.1e-264 915.2 643 75.4
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 3.2e-229 798.9 725 64.1
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 6.7e-227 791.2 734 61.7
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 2.7e-212 742.7 727 59.6
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 2.0e-207 726.5 715 60.6
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 1.1e-205 720.7 715 60.6
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 5.3e-200 701.8 717 62.6
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.7e-198 696.8 717 59.3
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 2.9e-198 696.0 736 58.3
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 2.1e-143 513.8 564 50.5
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 4.0e-123 446.4 713 42.6
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 8.4e-121 438.7 720 41.7
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 1.1e-120 438.3 720 41.5
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 4.2e-120 436.4 770 40.6
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 2.3e-118 430.6 712 41.9
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 5.6e-117 426.0 714 39.2
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 1.2e-114 418.3 707 39.0
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 3.4e-114 416.8 704 38.6
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 7.6e-114 415.6 712 39.2
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 7.6e-114 415.6 769 39.3
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 7.6e-114 415.6 704 38.5
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 1.7e-113 414.5 752 37.6
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 4.9e-113 412.9 687 39.9
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 6.4e-113 412.5 717 40.4
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 8.4e-113 412.1 752 37.8
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 9.3e-112 408.7 763 37.5
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.7e-111 407.1 717 40.2
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 3.5e-111 406.8 667 41.8
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 1.3e-110 404.8 769 39.1
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 6.7e-110 402.5 743 37.3
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 2.8e-108 397.1 784 37.8
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 4.0e-107 393.3 781 36.9
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 4.0e-107 393.3 652 41.1
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 2.5e-104 384.0 753 37.6
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 1.2e-103 381.7 676 38.6
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 7.9e-103 379.0 679 39.8
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 3.9e-102 376.7 717 37.5
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 6.2e-100 369.4 763 35.8
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 3.1e-99 367.1 435 54.3
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 1.5e-98 364.8 752 34.8
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 1.4e-96 358.2 612 40.8
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 6.7e-94 349.4 701 36.1
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 1.5e-93 348.2 642 36.8
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 2.5e-93 347.4 691 36.5
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 1.3e-92 345.1 739 39.5
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 3.7e-92 343.6 693 37.7
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 4.8e-92 343.2 692 37.9
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 8.2e-92 342.4 707 37.9
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 2.4e-91 340.9 727 38.1
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 9.0e-91 339.0 519 40.3
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 2.0e-90 337.8 689 36.1
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 7.7e-90 335.9 689 37.4
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 1.7e-89 334.7 486 40.5
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 3.8e-89 333.6 635 37.6
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 2.5e-88 330.9 731 34.6
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 7.9e-87 325.9 646 38.5
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 8.8e-86 322.4 697 37.2
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 2.5e-85 320.9 649 36.8
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 3.3e-85 320.5 587 37.6
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 2.2e-84 317.8 586 37.0
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 2.2e-84 317.8 383 46.5
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 2.8e-84 317.4 557 39.0
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 4.8e-84 316.6 672 35.9
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.4e-83 315.1 643 36.2
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 5.3e-83 313.2 684 37.1
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 6.9e-83 312.8 626 36.3
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 2.0e-82 311.2 660 35.3
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 2.0e-82 311.2 624 36.9
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 3.4e-82 310.5 624 37.5
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.5e-80 304.3 534 39.0
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 5.5e-80 303.1 551 38.5
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 7.2e-80 302.8 683 35.0
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 4.7e-79 300.1 677 35.2
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 4.7e-79 300.1 677 35.2
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 2.3e-78 297.7 488 41.0
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 8.2e-76 289.3 497 42.5
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 9.1e-75 285.8 671 34.0
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 5.9e-74 283.1 753 32.5
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 5.7e-69 266.5 399 40.9
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 2.4e-67 261.2 451 37.3
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 1.3e-65 255.4 267 61.0
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 1.5e-64 251.9 480 35.6
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 2.7e-63 247.7 288 51.4
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 4.7e-63 246.9 597 32.8
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 1.4e-59 235.3 375 36.5
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 5.9e-58 229.9 624 30.1
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 1.7e-57 228.4 680 31.0
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 2.9e-57 227.6 561 31.2
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 7.2e-56 223.0 511 34.2
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 2.7e-50 204.5 478 32.6
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 1.9e-48 198.4 424 37.3
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 1.6e-47 195.3 220 55.9
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 3.6e-47 194.1 395 35.7
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 5.7e-45 186.8 658 27.7
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 9.8e-45 186.0 364 33.8
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 3.2e-43 181.0 374 41.7
C05p62940 Brassica napus HOM05D000005 ORTHO05D000449 1.6e-42 178.7 158 65.8
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 1.2e-39 169.1 121 67.8
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 2.8e-39 167.9 356 36.2
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 3.1e-38 164.5 284 43.0
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 8.9e-38 162.9 218 39.4
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.4e-37 161.0 412 33.0
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 3.4e-37 161.0 297 44.4
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 2.4e-35 154.8 238 37.8
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 7.0e-35 153.3 325 37.8
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 2.0e-34 151.8 110 72.7
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 7.3e-32 143.3 260 39.2
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 1.3e-25 122.5 293 28.0
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 3.3e-24 117.9 250 38.8
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 4.7e-23 114.0 150 42.7
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 2.6e-21 108.2 301 32.6
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.3e-20 105.9 228 38.2
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 7.1e-19 100.1 205 43.4
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.1e-14 86.3 193 34.2
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 2.0e-13 82.0 97 47.4
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 1.1e-06 59.7 40 75.0
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.1e-06 59.7 218 29.8
FAN04G1450 Fragaria x ananassa HOM05D006063 ORTHO05D000023 4.0e-06 57.8 40 70.0


User provided reference genes

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