Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 2.0e-292 1008.4 534 100.0
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.3e-275 952.6 535 94.6
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 1.7e-275 952.2 535 94.4
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 7.4e-271 936.8 538 90.9
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 3.7e-270 934.5 538 91.8
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 8.1e-270 933.3 535 93.3
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 3.8e-267 924.5 535 91.6
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 2.1e-265 918.7 544 89.7
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 1.8e-264 915.6 551 89.1
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 1.1e-261 906.4 561 87.9
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 1.8e-253 879.0 539 85.7
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.2e-223 780.0 530 76.8
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 1.5e-223 779.6 509 78.8
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 4.4e-223 778.1 539 75.5
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 1.7e-222 776.2 534 76.2
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.8e-222 775.4 536 75.9
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 4.8e-222 774.6 501 78.6
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 8.2e-222 773.9 534 75.8
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 8.2e-222 773.9 534 75.3
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 1.1e-221 773.5 502 78.3
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.8e-221 772.7 542 74.4
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 3.1e-221 771.9 534 76.0
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 5.3e-221 771.2 529 76.0
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 9.1e-221 770.4 505 79.4
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 4.5e-220 768.1 530 74.5
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 5.9e-220 767.7 501 79.6
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 5.9e-220 767.7 526 75.9
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 7.7e-220 767.3 546 73.8
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 1.7e-219 766.1 526 75.1
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 2.2e-219 765.8 537 74.9
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 2.2e-219 765.8 503 77.5
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 1.1e-218 763.5 530 74.3
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.9e-218 762.7 537 75.0
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 7.2e-218 760.8 501 76.8
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 7.2e-218 760.8 540 73.9
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.2e-217 760.0 541 73.4
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 2.7e-217 758.8 503 77.5
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 1.8e-216 756.1 503 77.1
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 1.8e-216 756.1 504 76.8
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 3.0e-216 755.4 498 76.1
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 4.0e-216 755.0 502 77.1
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 4.0e-216 755.0 530 74.2
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 4.0e-216 755.0 533 73.7
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 5.2e-216 754.6 502 76.5
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 8.8e-216 753.8 535 74.8
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 1.2e-215 753.4 537 74.5
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 1.5e-215 753.1 545 74.1
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 2.0e-215 752.7 501 76.4
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 4.4e-215 751.5 534 73.2
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 5.7e-215 751.1 501 76.2
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 2.2e-214 749.2 502 76.7
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 2.8e-214 748.8 544 73.3
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 2.8e-214 748.8 501 76.0
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 4.8e-214 748.0 495 77.0
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 5.4e-213 744.6 504 74.8
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.1e-210 736.9 538 72.1
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.9e-210 736.1 530 73.6
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 3.3e-210 735.3 511 72.4
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.2e-209 733.4 498 75.3
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 1.2e-209 733.4 513 73.9
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.4e-208 729.9 512 73.6
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 1.8e-208 729.6 508 75.2
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 6.8e-208 727.6 503 73.4
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 1.2e-207 726.9 551 69.9
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 4.1e-205 718.4 537 69.1
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 2.0e-204 716.1 508 72.0
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.0e-203 713.8 623 62.9
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 1.7e-203 713.0 528 73.1
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 2.9e-203 712.2 501 74.1
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.8e-203 711.8 498 73.9
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.5e-202 709.1 498 73.5
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.8e-201 705.7 498 73.1
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.0e-200 703.7 527 71.3
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.8e-200 703.0 535 71.0
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 1.2e-199 700.3 518 72.4
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 3.4e-199 698.7 534 71.2
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 1.7e-198 696.4 503 73.0
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 2.2e-198 696.0 536 69.2
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.8e-197 693.0 630 61.7
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 3.0e-195 685.6 503 72.6
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 3.9e-195 685.3 534 68.2
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 8.9e-192 674.1 470 74.9
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 4.1e-189 665.2 537 65.4
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 4.3e-186 655.2 502 66.3
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 2.0e-183 646.4 592 61.7
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 4.4e-183 645.2 527 67.4
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 1.7e-182 643.3 513 66.7
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 3.7e-182 642.1 582 60.7
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 4.6e-180 635.2 530 63.2
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 1.3e-179 633.6 511 65.0
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 1.4e-176 623.6 500 67.4
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 5.8e-175 618.2 534 61.0
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 5.8e-175 618.2 534 61.0
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.7e-174 616.7 419 76.1
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 2.9e-174 615.9 360 90.3
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 3.6e-169 599.0 464 69.8
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 3.0e-163 579.3 467 64.5
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 1.2e-159 567.4 471 66.5
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 3.2e-157 559.3 520 56.9
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.1e-156 556.6 370 76.2
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 1.1e-154 550.8 487 58.7
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 2.9e-150 536.2 369 77.8
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 8.7e-147 524.6 386 71.2
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 1.3e-139 500.7 335 76.1
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 5.7e-122 442.2 319 72.4
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 4.8e-113 412.5 240 90.0
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 3.3e-106 389.8 527 43.5
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.3e-106 389.8 249 77.1
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 5.7e-106 389.0 249 77.1
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 1.6e-100 370.9 457 51.6
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 1.6e-95 354.4 487 43.5
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 1.7e-86 324.3 487 40.5
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 2.7e-71 273.9 311 53.1
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 1.7e-62 244.6 173 70.5
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 5.8e-50 203.0 494 33.8
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.2e-47 195.3 512 32.2
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 5.1e-46 189.9 199 54.3
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.9e-45 188.0 478 33.1
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 9.3e-40 169.1 112 77.7
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 6.2e-36 156.4 273 41.0
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 1.5e-34 151.8 129 62.0
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 7.6e-34 149.4 467 31.5
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 3.8e-33 147.1 448 31.9
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-31 142.1 452 30.8
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 4.8e-28 130.2 294 35.4
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 2.0e-26 124.8 334 33.2
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.6e-26 124.4 277 36.1
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 3.4e-26 124.0 277 36.5
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 3.2e-24 117.5 219 39.3
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.3e-22 111.3 86 61.6
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 9.7e-21 105.9 196 40.3
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 4.8e-20 103.6 74 66.2
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 8.2e-20 102.8 207 38.2
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 1.4e-19 102.1 359 28.7
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 3.1e-19 100.9 63 73.0
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 4.1e-19 100.5 352 29.3
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 3.4e-18 97.4 239 30.5
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 5.9e-18 96.7 198 37.9
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 5.9e-18 96.7 142 42.3
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 7.7e-18 96.3 323 27.2
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 2.9e-17 94.4 398 29.1
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 1.9e-16 91.7 429 27.5
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.9e-16 91.7 142 40.8
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 1.4e-14 85.5 311 28.0
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 1.5e-13 82.0 304 28.9
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-10 72.0 140 35.7
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 3.0e-06 57.8 32 81.2


User provided reference genes

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